Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   E3S67_RS12610 Genome accession   NZ_CP047802
Coordinates   2489436..2490548 (+) Length   370 a.a.
NCBI ID   WP_000775119.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1442     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2484436..2495548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S67_RS12585 (E3S67_12585) rnpA 2484699..2485052 (-) 354 WP_001789343.1 ribonuclease P protein component -
  E3S67_RS12590 (E3S67_12590) rpmH 2485173..2485310 (-) 138 WP_000240855.1 50S ribosomal protein L34 -
  E3S67_RS12595 (E3S67_12595) dnaA 2486041..2487402 (+) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  E3S67_RS12600 (E3S67_12600) dnaN 2487680..2488813 (+) 1134 WP_000969811.1 DNA polymerase III subunit beta -
  E3S67_RS12605 (E3S67_12605) yaaA 2489194..2489439 (+) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  E3S67_RS12610 (E3S67_12610) recF 2489436..2490548 (+) 1113 WP_000775119.1 DNA replication/repair protein RecF Machinery gene
  E3S67_RS12615 (E3S67_12615) gyrB 2490558..2492492 (+) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  E3S67_RS12620 (E3S67_12620) gyrA 2492529..2495198 (+) 2670 WP_000819067.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42443.49 Da        Isoelectric Point: 6.4362

>NTDB_id=363316 E3S67_RS12610 WP_000775119.1 2489436..2490548(+) (recF) [Staphylococcus aureus strain UP_1442]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEVLSLNYLPSLKFDYAQNEAAR
LEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=363316 E3S67_RS12610 WP_000775119.1 2489436..2490548(+) (recF) [Staphylococcus aureus strain UP_1442]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACCTCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGTGTTGTCGCTAAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
CTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.649

100

0.586
  recF Streptococcus pneumoniae R6

49.33

100

0.497

Multiple sequence alignment