Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC39_RS21950 Genome accession   NZ_CP040334
Coordinates   4381496..4381783 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 4376496..4386783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS21920 - 4376709..4377056 (+) 348 WP_000426321.1 DUF4257 domain-containing protein -
  EUC39_RS21925 - 4377141..4377365 (+) 225 WP_000162602.1 hypothetical protein -
  EUC39_RS21930 - 4377660..4378835 (-) 1176 WP_061661205.1 MFS transporter -
  EUC39_RS21935 - 4378883..4379818 (-) 936 WP_053564707.1 aldo/keto reductase -
  EUC39_RS21940 - 4379925..4380233 (+) 309 WP_053564708.1 ArsR/SmtB family transcription factor -
  EUC39_RS21945 - 4380273..4381220 (-) 948 WP_053564709.1 serine protease -
  EUC39_RS21950 abrB 4381496..4381783 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC39_RS21955 - 4381899..4383779 (-) 1881 WP_071731023.1 FtsX-like permease family protein -
  EUC39_RS21960 nadE 4384054..4384872 (+) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  EUC39_RS21965 - 4384921..4385382 (-) 462 WP_000035001.1 NUDIX hydrolase -
  EUC39_RS21970 - 4385414..4385611 (-) 198 WP_001048104.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=363316 EUC39_RS21950 WP_000648324.1 4381496..4381783(-) (abrB) [Bacillus cereus strain DLOU-Changhai]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=363316 EUC39_RS21950 WP_000648324.1 4381496..4381783(-) (abrB) [Bacillus cereus strain DLOU-Changhai]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAACAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment