Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC39_RS19800 Genome accession   NZ_CP040334
Coordinates   3954708..3954986 (-) Length   92 a.a.
NCBI ID   WP_106825077.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 3951664..3957648 3954708..3954986 within 0


Gene organization within MGE regions


Location: 3951664..3957648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS19775 - 3951664..3953127 (+) 1464 WP_414731342.1 exosporium leader peptide-containing protein -
  EUC39_RS19780 - 3953368..3953877 (-) 510 WP_106825075.1 dUTP diphosphatase -
  EUC39_RS19785 - 3953897..3954148 (-) 252 WP_076876551.1 helix-turn-helix domain containing protein -
  EUC39_RS19790 - 3954174..3954337 (-) 164 Protein_3854 DUF3954 domain-containing protein -
  EUC39_RS19795 - 3954356..3954715 (-) 360 WP_106825076.1 cell division protein SepF -
  EUC39_RS19800 abrB 3954708..3954986 (-) 279 WP_106825077.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC39_RS19805 - 3955003..3955197 (-) 195 WP_076876548.1 hypothetical protein -
  EUC39_RS19810 - 3955212..3955810 (-) 599 Protein_3858 ATP-binding protein -
  EUC39_RS19815 - 3955848..3956312 (-) 465 WP_106825078.1 hypothetical protein -
  EUC39_RS19820 - 3956545..3957648 (+) 1104 WP_157418096.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10157.75 Da        Isoelectric Point: 5.1599

>NTDB_id=363313 EUC39_RS19800 WP_106825077.1 3954708..3954986(-) (abrB) [Bacillus cereus strain DLOU-Changhai]
MKNTGVARKVEELGRVVIPVELRRTLGIVEGTTLDFHVEGENIVLRKYENSCFVTGEVSETNIELLGGRMFLSKEGAIEL
LDLIQKSGMAHA

Nucleotide


Download         Length: 279 bp        

>NTDB_id=363313 EUC39_RS19800 WP_106825077.1 3954708..3954986(-) (abrB) [Bacillus cereus strain DLOU-Changhai]
ATGAAAAACACAGGCGTTGCAAGAAAAGTGGAGGAGCTAGGTCGTGTAGTAATTCCAGTAGAGTTACGCAGAACTTTAGG
GATTGTCGAAGGAACGACATTAGATTTTCATGTCGAGGGTGAAAACATTGTTCTAAGAAAATATGAAAACTCATGCTTTG
TAACGGGTGAAGTTTCTGAAACCAACATAGAGTTGCTAGGTGGCCGAATGTTTTTAAGCAAGGAAGGGGCAATTGAATTA
CTGGACCTTATTCAGAAGAGTGGGATGGCACATGCCTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(52-86)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.471

94.565

0.543

Multiple sequence alignment