Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC39_RS19685 Genome accession   NZ_CP040334
Coordinates   3934426..3934704 (-) Length   92 a.a.
NCBI ID   WP_000842216.1    Uniprot ID   A0A9W5QHH7
Organism   Bacillus cereus strain DLOU-Changhai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3929426..3939704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS19670 - 3930913..3931572 (-) 660 WP_000876934.1 CatB-related O-acetyltransferase -
  EUC39_RS19675 - 3931825..3932583 (-) 759 WP_029442323.1 TSUP family transporter -
  EUC39_RS19680 - 3932651..3933901 (-) 1251 WP_157418093.1 hypothetical protein -
  EUC39_RS19685 abrB 3934426..3934704 (-) 279 WP_000842216.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC39_RS19690 - 3934845..3935722 (-) 878 Protein_3833 helix-turn-helix domain-containing protein -
  EUC39_RS19695 - 3936098..3936349 (+) 252 WP_000827555.1 response regulator transcription factor -
  EUC39_RS19700 - 3936823..3938004 (-) 1182 WP_157418094.1 agmatine/peptidylarginine deiminase -
  EUC39_RS19705 - 3938313..3938915 (-) 603 WP_153592980.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10378.28 Da        Isoelectric Point: 10.0092

>NTDB_id=363312 EUC39_RS19685 WP_000842216.1 3934426..3934704(-) (abrB) [Bacillus cereus strain DLOU-Changhai]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=363312 EUC39_RS19685 WP_000842216.1 3934426..3934704(-) (abrB) [Bacillus cereus strain DLOU-Changhai]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCACCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489

Multiple sequence alignment