Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EUC39_RS12335 Genome accession   NZ_CP040334
Coordinates   2400579..2401037 (-) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2395579..2406037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS12310 - 2395736..2397277 (-) 1542 WP_053563725.1 MDR family MFS transporter -
  EUC39_RS12315 - 2397689..2398189 (+) 501 WP_157417641.1 hypothetical protein -
  EUC39_RS12320 - 2398221..2398454 (-) 234 WP_000939446.1 SPP1 phage holin family protein -
  EUC39_RS12325 - 2398618..2399271 (+) 654 WP_098685940.1 diguanylate cyclase domain-containing protein -
  EUC39_RS12330 - 2399885..2400547 (+) 663 WP_000922465.1 YkyA family protein -
  EUC39_RS12335 kre 2400579..2401037 (-) 459 WP_000804864.1 YkyB family protein Regulator
  EUC39_RS12340 - 2401179..2402753 (+) 1575 WP_157417643.1 Ppx/GppA family phosphatase -
  EUC39_RS12345 - 2402862..2404970 (+) 2109 WP_053563730.1 polyphosphate kinase -
  EUC39_RS12350 - 2405131..2405367 (-) 237 WP_000283738.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=363307 EUC39_RS12335 WP_000804864.1 2400579..2401037(-) (kre) [Bacillus cereus strain DLOU-Changhai]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=363307 EUC39_RS12335 WP_000804864.1 2400579..2401037(-) (kre) [Bacillus cereus strain DLOU-Changhai]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAACGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCTGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment