Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   EUC39_RS12290 Genome accession   NZ_CP040334
Coordinates   2391390..2391824 (+) Length   144 a.a.
NCBI ID   WP_000811494.1    Uniprot ID   A0A9Q6M5X1
Organism   Bacillus cereus strain DLOU-Changhai     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2386390..2396824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS12270 - 2387304..2388467 (-) 1164 WP_000434575.1 aminotransferase A -
  EUC39_RS12275 - 2388590..2388790 (-) 201 WP_000929276.1 hypothetical protein -
  EUC39_RS12280 kinB 2389101..2390375 (+) 1275 WP_000420372.1 sporulation sensor histidine kinase KinB -
  EUC39_RS12285 - 2390414..2391163 (-) 750 WP_000388467.1 DUF3967 domain-containing protein -
  EUC39_RS12290 nucA/comI 2391390..2391824 (+) 435 WP_000811494.1 DNA-entry nuclease Machinery gene
  EUC39_RS12295 - 2391861..2392250 (+) 390 WP_000424024.1 competence protein ComJ -
  EUC39_RS12300 metE 2392289..2394577 (-) 2289 WP_157417639.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  EUC39_RS12305 - 2395089..2395646 (-) 558 WP_000062063.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16054.43 Da        Isoelectric Point: 8.4331

>NTDB_id=363306 EUC39_RS12290 WP_000811494.1 2391390..2391824(+) (nucA/comI) [Bacillus cereus strain DLOU-Changhai]
MKQLKGIIISIIAILSILVAVYEVLVPEETSVKKTNTYDQVLEFPKERYPETGKHITDAIKEGHSEVCTIDRGGAADRRK
LSLAPYPSKKGYDRDEWPMAMCKEGGKGAHIEYISPADNRGAGSWVGNKLDKYPDGTRVKFEVK

Nucleotide


Download         Length: 435 bp        

>NTDB_id=363306 EUC39_RS12290 WP_000811494.1 2391390..2391824(+) (nucA/comI) [Bacillus cereus strain DLOU-Changhai]
ATGAAGCAATTAAAAGGTATTATCATTTCAATTATCGCAATTCTGTCTATTTTAGTAGCAGTTTATGAAGTACTTGTGCC
AGAGGAAACAAGTGTAAAGAAAACGAATACGTATGATCAAGTGTTAGAATTTCCGAAAGAACGTTATCCAGAGACAGGAA
AACATATTACGGATGCTATAAAAGAAGGGCATTCAGAAGTTTGTACAATCGATCGTGGTGGTGCTGCAGATAGAAGGAAA
TTGTCGTTAGCACCGTATCCATCAAAAAAAGGGTATGATCGTGATGAATGGCCAATGGCGATGTGCAAGGAAGGCGGAAA
AGGAGCACATATTGAATATATAAGTCCGGCGGATAACCGGGGAGCAGGCTCTTGGGTAGGGAATAAGTTAGATAAATATC
CAGATGGTACGCGTGTGAAATTTGAAGTGAAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

69.912

78.472

0.549

Multiple sequence alignment