Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   EUC39_RS10790 Genome accession   NZ_CP040334
Coordinates   2128255..2129001 (+) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2123255..2134001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS10760 - 2123544..2125688 (+) 2145 WP_000091512.1 HD family phosphohydrolase -
  EUC39_RS10765 ybeY 2125685..2126155 (+) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  EUC39_RS10770 - 2126152..2126505 (+) 354 WP_000715464.1 diacylglycerol kinase family protein -
  EUC39_RS10775 - 2126605..2127003 (+) 399 WP_001086285.1 cytidine deaminase -
  EUC39_RS10780 era 2126996..2127901 (+) 906 WP_001080230.1 GTPase Era -
  EUC39_RS10785 - 2128078..2128221 (+) 144 WP_000883924.1 YqzL family protein -
  EUC39_RS10790 recO 2128255..2129001 (+) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  EUC39_RS10795 - 2129109..2129741 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  EUC39_RS10800 - 2129771..2130583 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  EUC39_RS27255 - 2131219..2131362 (+) 144 WP_000479734.1 hypothetical protein -
  EUC39_RS10805 dnaG 2131444..2133240 (+) 1797 WP_000528221.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=363302 EUC39_RS10790 WP_000487009.1 2128255..2129001(+) (recO) [Bacillus cereus strain DLOU-Changhai]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=363302 EUC39_RS10790 WP_000487009.1 2128255..2129001(+) (recO) [Bacillus cereus strain DLOU-Changhai]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTTATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTAAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment