Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   EUC39_RS04905 Genome accession   NZ_CP040334
Coordinates   980450..981577 (-) Length   375 a.a.
NCBI ID   WP_106823395.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 975450..986577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS04895 gyrA 975930..978401 (-) 2472 WP_001282866.1 DNA gyrase subunit A -
  EUC39_RS04900 gyrB 978490..980410 (-) 1921 Protein_872 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  EUC39_RS04905 recF 980450..981577 (-) 1128 WP_106823395.1 DNA replication/repair protein RecF Machinery gene
  EUC39_RS04910 yaaA 981590..981802 (-) 213 WP_000680510.1 S4 domain-containing protein YaaA -
  EUC39_RS04915 dnaN 981930..983075 (-) 1146 WP_001212886.1 DNA polymerase III subunit beta -
  EUC39_RS04920 dnaA 983255..984595 (-) 1341 WP_000428028.1 chromosomal replication initiator protein DnaA -
  EUC39_RS04925 rpmH 985160..985294 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  EUC39_RS04930 rnpA 985371..985718 (+) 348 WP_000726621.1 ribonuclease P protein component -
  EUC39_RS04935 spoIIIJ 985771..986538 (+) 768 WP_000727740.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43290.60 Da        Isoelectric Point: 6.7809

>NTDB_id=363286 EUC39_RS04905 WP_106823395.1 980450..981577(-) (recF) [Bacillus cereus strain DLOU-Changhai]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEEFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTVQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKDAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=363286 EUC39_RS04905 WP_106823395.1 980450..981577(-) (recF) [Bacillus cereus strain DLOU-Changhai]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCACAAGGGAAAACAAACTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGAGTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAGTTAAGTCAATA
TATTGGCGTTATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACAGTTCAACTAATTGA
GCATGGTGCAAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGTGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTAATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTACTGGATGATGTTTTATCA
GAATTAGACGATTATCGTCAATCACATCTGTTAAATACAATTCAAGGAAAGGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGATGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.304

98.133

0.651

Multiple sequence alignment