Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   EUC39_RS04590 Genome accession   NZ_CP040334
Coordinates   924266..924550 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain DLOU-Changhai     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 919266..929550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS04575 rnmV 920090..920647 (-) 558 WP_000692837.1 ribonuclease M5 -
  EUC39_RS04580 - 920863..921630 (-) 768 WP_000895840.1 TatD family hydrolase -
  EUC39_RS04585 metG 921797..923779 (-) 1983 WP_231690753.1 methionine--tRNA ligase -
  EUC39_RS04590 abrB 924266..924550 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  EUC39_RS04595 rsmI 924571..925446 (-) 876 WP_000267824.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EUC39_RS04600 - 925415..925705 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  EUC39_RS04605 - 925692..926432 (-) 741 WP_001055355.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  EUC39_RS04610 yabA 926515..926865 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  EUC39_RS04615 - 926880..927707 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  EUC39_RS04620 holB 927713..928696 (-) 984 WP_106823391.1 DNA polymerase III subunit delta' -
  EUC39_RS04625 tmk 928732..929358 (-) 627 WP_000677220.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=363284 EUC39_RS04590 WP_000843036.1 924266..924550(+) (abrB) [Bacillus cereus strain DLOU-Changhai]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=363284 EUC39_RS04590 WP_000843036.1 924266..924550(+) (abrB) [Bacillus cereus strain DLOU-Changhai]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment