Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   TCK1_RS22745 Genome accession   NZ_CP040324
Coordinates   4983694..4985064 (-) Length   456 a.a.
NCBI ID   WP_012274175.1    Uniprot ID   A0A1W2CNH3
Organism   Pseudomonas monteilii strain TCU-CK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4978694..4990064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TCK1_RS22725 (TCK1_4555) - 4978993..4979190 (-) 198 WP_016713459.1 YbdD/YjiX family protein -
  TCK1_RS22730 (TCK1_4556) - 4979208..4981274 (-) 2067 WP_019098817.1 carbon starvation CstA family protein -
  TCK1_RS22735 (TCK1_4557) - 4981452..4981817 (+) 366 WP_019098816.1 PilZ domain-containing protein -
  TCK1_RS22740 (TCK1_4558) - 4982081..4983598 (+) 1518 WP_019098815.1 nucleobase:cation symporter-2 family protein -
  TCK1_RS22745 (TCK1_4559) radA 4983694..4985064 (-) 1371 WP_012274175.1 DNA repair protein RadA Machinery gene
  TCK1_RS22750 (TCK1_4560) mscL 4985241..4985660 (+) 420 WP_019098814.1 large-conductance mechanosensitive channel protein MscL -
  TCK1_RS22755 (TCK1_4561) - 4985689..4986465 (-) 777 WP_025753999.1 ferredoxin--NADP reductase -
  TCK1_RS22760 (TCK1_4562) - 4986679..4987386 (+) 708 WP_019098812.1 autoinducer binding domain-containing protein -
  TCK1_RS22765 (TCK1_4563) - 4987483..4988607 (+) 1125 WP_025754000.1 methyltransferase -
  TCK1_RS22770 (TCK1_4564) - 4988639..4988794 (-) 156 WP_016713451.1 DUF2474 domain-containing protein -
  TCK1_RS22775 (TCK1_4565) cydB 4988804..4989811 (-) 1008 WP_019098811.1 cytochrome d ubiquinol oxidase subunit II -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48767.21 Da        Isoelectric Point: 6.8985

>NTDB_id=363264 TCK1_RS22745 WP_012274175.1 4983694..4985064(-) (radA) [Pseudomonas monteilii strain TCU-CK1]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=363264 TCK1_RS22745 WP_012274175.1 4983694..4985064(-) (radA) [Pseudomonas monteilii strain TCU-CK1]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCAGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAGAGCGGCGGCGCGGCGGCACCCAGCAGCGGCCGCGCCGGCTGGA
CCGGGCAACAGGCACAGATCAAGACCCTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGCTTCACCACCAGCAGCACCGAA
CTGGACCGCGTGCTGGGAGGAGGCCTGGTGGATGGCTCGGTGGTGCTGATTGGTGGCGACCCCGGCATCGGCAAGTCGAC
CATCCTGCTGCAGACGTTGTGCAACATTGCCGTGGGCATGCCGGCACTGTATGTGACGGGTGAGGAATCGCAGCAGCAGG
TGGCCATGCGTTCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTCAAGGTGATGACCGAAACCTGCATCGAGACCATCATC
GCCACAGCCCGCGTCGAGAAACCACGGGTGATGGTGATCGACTCGATCCAGACCATTTTCACCGAACAGTTGCAATCAGC
GCCCGGTGGCGTGGCCCAGGTGCGTGAGAGCACGGCGCTGCTGGTGCGTTACGCCAAGCAAAGCGGTACGGCCATCTTCC
TGGTCGGCCATGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTGGAGCACATGGTCGACACCGTGTTGTATTTC
GAGGGTGAGTCCGATGGCCGACTGCGCTTGCTGCGTGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAACTGGGTGTATT
CGGCATGACCGACCGAGGCCTTAAAGAAGTCTCCAACCCTTCGGCGATCTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTCATGGCGACTTGGGAGGGCACCCGGCCGATGCTGGTCGAGGTGCAGGCACTGGTCGACGACAGCCACCTG
GCCAACCCCCGGCGGGTAACCCTGGGCCTGGACCAGAACCGTCTGGCCATGTTGTTGGCGGTGTTGCACCGCCACGGCGG
GATTCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAGACAGCCTCGGACCTGGCGT
TGCTGGCGGCGGTGATGTCCAGCTTGCGCAACCGGCCACTCGCCCATGGGCTGCTGGTGTTTGGCGAGATTGGCTTGTCG
GGCGAGGTGCGGCCTGTGCCCAGCGGTCAGGAGCGGTTGAAGGAGGCGGCCAAGCATGGTTTCAAGCGTGCCATTGTGCC
CAAGGGCAATGCGCCGAAAGAACCGCCAGCGGGGTTGCAGGTGATTGCCGTGACTCGGCTGGAGCAGGCTCTGGATGCAC
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W2CNH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461

Multiple sequence alignment