Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FD724_RS17155 Genome accession   NZ_CP040281
Coordinates   3996047..3997573 (-) Length   508 a.a.
NCBI ID   WP_179073453.1    Uniprot ID   -
Organism   Nostoc sp. C057     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3991047..4002573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD724_RS17140 (FD724_17195) - 3992471..3992846 (-) 376 Protein_3439 Uma2 family endonuclease -
  FD724_RS17145 (FD724_17200) - 3992923..3994914 (-) 1992 WP_179073451.1 protein kinase -
  FD724_RS17150 (FD724_17205) - 3995182..3995931 (-) 750 WP_179073452.1 Uma2 family endonuclease -
  FD724_RS17155 (FD724_17210) radA 3996047..3997573 (-) 1527 WP_179073453.1 DNA repair protein RadA Machinery gene
  FD724_RS17160 (FD724_17215) rpaB 3997744..3998472 (+) 729 WP_012412029.1 response regulator transcription factor RpaB -
  FD724_RS17165 (FD724_17220) - 3998571..3999209 (+) 639 WP_179073454.1 cofactor assembly of complex C subunit B -
  FD724_RS17170 (FD724_17225) - 3999510..4000424 (-) 915 WP_179073455.1 M48 family metallopeptidase -
  FD724_RS40950 - 4000451..4000579 (+) 129 WP_256874295.1 hypothetical protein -
  FD724_RS17175 (FD724_17230) - 4000682..4001200 (+) 519 WP_012412032.1 DUF456 domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54532.40 Da        Isoelectric Point: 4.8766

>NTDB_id=363019 FD724_RS17155 WP_179073453.1 3996047..3997573(-) (radA) [Nostoc sp. C057]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHNKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKPL
SVVNEEKVEVVVDPTLPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVAEGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=363019 FD724_RS17155 WP_179073453.1 3996047..3997573(-) (radA) [Nostoc sp. C057]
ATGGCAAAGCCAAAAACATTTTTCACTTGTAACGAATGTGGAGCAGAATCCCCCCAGTGGTTTGGTAAGTGTCCAGCTTG
CGGTACTTACAACTCTCTAGAAGAACAAATTTCTATTCAATCCTCAGTAGATGTACCCAGTCGAGGGGGGGTAAGTAGTT
GGCAATCCGCTCAAGGCAATGGCAAATCTCACAATAAACCAGCTAAAGCGCGAGCTTCCTTAACATTTGATCAAATTACT
GATCGCCAAATCGCTCGCTGGGAGTCTGGTTATGGAGAATTAGATCGAGTGCTTGGAGGTGGGGTTGTACCTGGCTCTAT
GGTGCTGATTGGTGGCGATCCAGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCTAATCAATTAGCACAGAAATACC
GCATCCTTTACGTAACCGGTGAAGAATCGGGACAGCAAGTAAAATTACGAGCTTCTCGTTTGGGAGTATCAAAACCTCTA
AGTGTGGTTAATGAGGAGAAGGTTGAAGTAGTGGTAGATCCGACACTACCCATAGACCCTGACAGTATAGGTGCAGATTT
ATATGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGATTCTCTCAAGCCAAACGTGGCGGTGATTGATA
GTATCCAAACTGTGTTTTTTCCAGCGTTGACTTCTGCACCAGGTTCGGTGGCTCAGGTACGGGAATGTACAGCCGCACTG
ATGAAGGTAGCGAAGCACGAAGATGTCACCATGCTGATTGTGGGACACGTTACCAAAGAAGGAGCGATCGCAGGGCCAAA
AGTTTTAGAACATTTAGTTGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCTTCCCATCGGTTATTACGCACGGTGA
AAAACCGCTTCGGTGCAACTCACGAAATCGGCATATTTGAAATGGTGGCGGAGGGACTACGGGAAGTCTCCAATCCCTCA
GAGCTATTTTTAGGCAACCGTGACGATCCAGCGCCAGGTACTGCCATTGTGGTTGCTTGCGAAGGCACTCGCCCGATAGT
TGTAGAATTGCAAGCTTTGGTGAGTCCCACCAGCTACCCTTCACCTCGGCGGGCTGGAACTGGCGTAGACTACAACCGCC
TAGTACAAATTCTCGCCGTCTTAGAAAAACGAGTGGGAATTCCCATGTCCAAGTTAGATTCTTACGTTGCTTCTGCGGGT
GGGTTGAATGTGGAAGAACCGGCAGTAGATTTAGGAATAGCGATCGCAATTGTAGCTAGTTTCCGCGATCGCATCGTCGA
TCCCGGTACAGTATTAATCGGTGAAGTTGGCCTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTAAAAG
AAGCTGCTAAGTTGGGATTTAAAAGAGCGATCGTGCCAAAAGGGACAAAATTCCCCGATTTAAATATTGAGATATTACCA
GTATCCAAAGTCATAGATGCGATTATCGCCGCCATTCCGCATCAAGAATTGACAGCCGACGATTTAGAACCCGATGAAGA
TGAGTAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(90-296)

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.607

97.244

0.492
  radA Streptococcus mitis SK321

45.825

96.654

0.443
  radA Streptococcus pneumoniae Rx1

47.335

92.323

0.437
  radA Streptococcus pneumoniae D39

47.335

92.323

0.437
  radA Streptococcus pneumoniae R6

47.335

92.323

0.437
  radA Streptococcus pneumoniae TIGR4

47.335

92.323

0.437
  radA Streptococcus mitis NCTC 12261

47.335

92.323

0.437

Multiple sequence alignment