Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FD723_RS28490 Genome accession   NZ_CP040272
Coordinates   6890271..6891797 (-) Length   508 a.a.
NCBI ID   WP_179068345.1    Uniprot ID   -
Organism   Nostoc sp. C052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6885271..6896797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD723_RS28455 (FD723_28370) prfA 6885554..6886651 (+) 1098 WP_163927947.1 peptide chain release factor 1 -
  FD723_RS28460 (FD723_28375) - 6886661..6887107 (-) 447 WP_179068342.1 hypothetical protein -
  FD723_RS28465 (FD723_28380) - 6887348..6887710 (+) 363 WP_012410694.1 helix-turn-helix domain-containing protein -
  FD723_RS28470 (FD723_28385) - 6887787..6888245 (+) 459 WP_179068343.1 DUF29 domain-containing protein -
  FD723_RS28475 (FD723_28390) - 6888466..6888993 (+) 528 WP_306296997.1 hypothetical protein -
  FD723_RS28480 (FD723_28395) - 6889025..6889521 (-) 497 Protein_5684 serine/threonine protein kinase -
  FD723_RS28485 (FD723_28400) - 6889488..6890192 (-) 705 WP_179068344.1 Uma2 family endonuclease -
  FD723_RS28490 (FD723_28405) radA 6890271..6891797 (-) 1527 WP_179068345.1 DNA repair protein RadA Machinery gene
  FD723_RS28495 (FD723_28410) rpaB 6891968..6892696 (+) 729 WP_012412029.1 response regulator transcription factor RpaB -
  FD723_RS28500 (FD723_28415) - 6892826..6893464 (+) 639 WP_179068346.1 cofactor assembly of complex C subunit B -
  FD723_RS28505 (FD723_28420) - 6893897..6894811 (-) 915 WP_179069314.1 M48 family metallopeptidase -
  FD723_RS28510 (FD723_28425) - 6895170..6895688 (+) 519 WP_179068347.1 DUF456 domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54517.39 Da        Isoelectric Point: 4.9280

>NTDB_id=363002 FD723_RS28490 WP_179068345.1 6890271..6891797(-) (radA) [Nostoc sp. C052]
MAKPKTFFTCNECGAESPQWFGKCPACGTYNSLEEQISIQSSVDVPSRGGVSSWQSAQGNGKSHNKPAKARASLTFDQIT
DRQIARWESGYGELDRVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSNQLAQKYRILYVTGEESGQQVKLRASRLGVSKPL
SVVNEENIKVVVDPALPIDPDSIGADLYVLPETDLEEILREIDSLKPNVAVIDSIQTVFFPALTSAPGSVAQVRECTAAL
MKVAKHEDVTMLIVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFASHRLLRTVKNRFGATHEIGIFEMVTDGLREVSNPS
ELFLGNRDDPAPGTAIVVACEGTRPIVVELQALVSPTSYPSPRRAGTGVDYNRLVQILAVLEKRVGIPMSKLDSYVASAG
GLNVEEPAVDLGIAIAIVASFRDRIVDPGTVLIGEVGLGGQVRSVSQMELRLKEAAKLGFKRAIVPKGTKFPDLNIEILP
VSKVIDAIIAAIPHQELTADDLEPDEDE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=363002 FD723_RS28490 WP_179068345.1 6890271..6891797(-) (radA) [Nostoc sp. C052]
ATGGCAAAGCCAAAAACCTTTTTCACTTGTAATGAATGTGGAGCAGAATCGCCCCAGTGGTTTGGTAAGTGTCCTGCTTG
CGGTACTTACAACTCCCTAGAAGAACAAATTTCGATTCAATCCTCAGTAGATGTACCCAGTCGGGGGGGAGTGAGTAGTT
GGCAATCAGCTCAAGGCAATGGCAAATCTCACAATAAACCAGCTAAAGCACGAGCCTCTTTAACATTCGATCAAATTACC
GATCGCCAAATTGCCCGCTGGGAGTCTGGTTATGGAGAATTAGATCGGGTGCTTGGAGGTGGGGTTGTCCCTGGCTCTAT
GGTGTTGATTGGTGGCGATCCAGGTATTGGTAAATCGACTTTATTGTTGCAAGTATCAAATCAATTAGCACAAAAATACC
GCATCCTTTACGTAACCGGTGAAGAATCGGGACAGCAGGTAAAGTTACGAGCTTCCCGTTTAGGAGTATCAAAACCCCTA
AGTGTGGTTAATGAGGAGAATATTAAGGTAGTAGTAGATCCGGCACTTCCCATAGATCCTGACAGTATTGGTGCAGATTT
ATACGTACTGCCAGAAACAGATTTAGAAGAAATTTTACGGGAAATAGACTCTCTCAAGCCAAACGTGGCAGTGATTGATA
GTATCCAAACGGTGTTTTTTCCGGCGCTGACTTCTGCACCAGGTTCAGTAGCTCAGGTACGGGAATGTACAGCAGCATTG
ATGAAGGTGGCGAAGCACGAAGATGTCACCATGCTGATTGTGGGACACGTTACCAAAGAAGGAGCGATCGCCGGGCCAAA
AGTTTTAGAACATTTAGTCGATACAGTGTTGTATTTTGAAGGCGATCGCTTTGCCTCCCATCGGTTATTACGCACAGTTA
AAAACCGCTTCGGCGCAACTCACGAAATCGGTATCTTTGAAATGGTGACAGATGGATTGCGAGAAGTCTCCAACCCCTCA
GAGCTATTTTTAGGCAACCGTGACGATCCAGCGCCAGGTACGGCCATTGTGGTTGCTTGTGAAGGCACTCGCCCGATTGT
TGTGGAATTGCAAGCTTTGGTGAGTCCTACCAGCTACCCCTCACCCCGTCGTGCTGGAACTGGTGTAGACTACAACCGCC
TAGTACAAATTCTCGCCGTCTTAGAAAAACGAGTGGGAATTCCGATGTCCAAGTTAGATTCTTACGTTGCTTCTGCGGGT
GGGTTGAATGTGGAAGAACCGGCGGTAGATTTGGGAATAGCGATCGCAATTGTCGCTAGTTTCCGCGATCGCATCGTCGA
TCCCGGTACAGTATTGATCGGCGAAGTTGGGTTAGGTGGACAAGTGCGATCGGTTTCCCAAATGGAACTGCGGTTAAAAG
AAGCTGCTAAATTGGGATTTAAAAGAGCGATCGTCCCAAAAGGGACAAAATTCCCCGATTTAAATATTGAGATATTACCA
GTCTCTAAAGTCATAGATGCGATTATCGCCGCCATCCCGCATCAGGAATTGACAGCCGACGATTTAGAACCCGATGAAGA
TGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(402-467)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(90-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.405

97.244

0.49
  radA Streptococcus mitis SK321

45.825

96.654

0.443
  radA Streptococcus pneumoniae Rx1

47.335

92.323

0.437
  radA Streptococcus pneumoniae D39

47.335

92.323

0.437
  radA Streptococcus pneumoniae R6

47.335

92.323

0.437
  radA Streptococcus pneumoniae TIGR4

47.335

92.323

0.437
  radA Streptococcus mitis NCTC 12261

47.335

92.323

0.437

Multiple sequence alignment