Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   FD723_RS25790 Genome accession   NZ_CP040272
Coordinates   6243900..6245006 (+) Length   368 a.a.
NCBI ID   WP_179067909.1    Uniprot ID   -
Organism   Nostoc sp. C052     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6238900..6250006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD723_RS25765 (FD723_25690) - 6239237..6239749 (-) 513 WP_179067904.1 TIGR02652 family protein -
  FD723_RS25770 (FD723_25700) - 6239989..6240516 (+) 528 WP_179067905.1 gamma carbonic anhydrase family protein -
  FD723_RS25775 (FD723_25705) - 6240769..6240894 (+) 126 WP_179067906.1 photosystem II protein Y -
  FD723_RS25780 (FD723_25710) - 6241040..6242362 (+) 1323 WP_179067907.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  FD723_RS25785 (FD723_25715) - 6242449..6243747 (-) 1299 WP_179067908.1 sugar ABC transporter substrate-binding protein -
  FD723_RS25790 (FD723_25720) pilM 6243900..6245006 (+) 1107 WP_179067909.1 type IV pilus assembly protein PilM Machinery gene
  FD723_RS25795 (FD723_25725) - 6245011..6245787 (+) 777 WP_179067910.1 PilN domain-containing protein -
  FD723_RS25800 (FD723_25730) - 6245784..6246551 (+) 768 WP_179067911.1 pilus assembly protein PilO -
  FD723_RS25805 (FD723_25735) - 6246706..6248988 (+) 2283 WP_179067912.1 type IV pilus secretin family protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 40371.28 Da        Isoelectric Point: 4.4847

>NTDB_id=363000 FD723_RS25790 WP_179067909.1 6243900..6245006(+) (pilM) [Nostoc sp. C052]
MVKSFTSLFGKSKKGVGIELAPERVNVVQLRKHGQGLKLETFTSVAVPEGIVTDGQITDPAAMAQLIQQALAESKIKTSR
VATGVPGRDSIVRIIPVPAELDDKELREMVLNHEAGLYLPYPREEADVDYQKLGYFQDEDGIEKVHVLLVATRKEITDTY
ISTFEQAGLQIDVLEINSFALIRTIRDQLRQFGPQEAAVLVDIEFDSTEIAIIVNGVPQFSRTVPIGTYQMQTALARAMS
LPTSRDMELLHGMVIPQTSLDGGKTGVTEIDPGMAAILRVLGELTDELRRSIDFYLNQSENLEVAQILLAGPGGGLQQLD
EFFTQRLSLPTTQIDPIGALSLDVDTEKYPQVQRSGLAIVLGLGMREV

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=363000 FD723_RS25790 WP_179067909.1 6243900..6245006(+) (pilM) [Nostoc sp. C052]
GTGGTAAAAAGTTTCACTAGTCTGTTTGGCAAATCGAAAAAAGGGGTCGGCATTGAACTTGCTCCCGAACGGGTAAATGT
AGTTCAGCTACGCAAGCACGGTCAAGGCTTGAAACTAGAAACTTTTACATCGGTAGCAGTTCCAGAAGGCATCGTTACCG
ATGGTCAAATCACCGACCCCGCAGCAATGGCGCAGTTAATCCAGCAGGCGCTAGCTGAAAGCAAAATCAAAACTTCTCGC
GTTGCTACTGGTGTCCCAGGACGAGATTCTATCGTTCGAATTATACCAGTGCCAGCAGAGTTAGATGATAAAGAACTGCG
AGAAATGGTGCTGAACCATGAAGCAGGTTTGTATTTACCCTATCCTCGTGAAGAGGCTGATGTAGATTATCAGAAACTTG
GGTACTTTCAAGATGAAGATGGCATTGAAAAAGTACACGTCCTCCTAGTTGCCACCCGCAAGGAGATAACGGATACCTAT
ATAAGTACATTCGAGCAGGCAGGATTACAGATCGATGTTTTAGAAATTAACAGTTTTGCTCTAATTCGGACTATTCGCGA
TCAACTGCGACAATTTGGGCCGCAAGAAGCAGCAGTACTCGTTGATATCGAGTTCGATAGTACAGAAATCGCCATCATCG
TTAACGGAGTGCCGCAATTTTCACGCACAGTCCCAATTGGGACTTATCAAATGCAAACGGCCTTAGCAAGGGCAATGAGC
TTACCCACATCACGAGATATGGAACTGTTACACGGAATGGTCATTCCCCAAACTTCCCTAGACGGCGGTAAAACTGGCGT
TACTGAAATCGATCCTGGCATGGCTGCCATATTGAGAGTCTTGGGAGAACTAACGGATGAACTGCGCCGTTCCATCGATT
TTTACCTCAATCAAAGTGAAAATTTGGAAGTAGCGCAGATTTTATTAGCTGGGCCGGGAGGTGGACTGCAACAGCTAGAT
GAATTTTTTACTCAACGATTGAGCTTGCCAACTACCCAAATAGATCCAATCGGGGCTTTGTCTTTGGATGTTGACACTGA
GAAATATCCACAGGTACAACGCTCTGGTTTAGCGATCGTACTCGGTCTAGGAATGCGGGAGGTGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(283-367)

Type IV pilus assembly protein PilM; (PilM_2)

(17-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

67.575

99.728

0.674

Multiple sequence alignment