Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   FD987_RS07530 Genome accession   NZ_CP040239
Coordinates   1480851..1481162 (-) Length   103 a.a.
NCBI ID   WP_002779316.1    Uniprot ID   A0A3K5JRX6
Organism   Campylobacter coli strain S9     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1475851..1486162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS07510 (FD987_07510) ctsE 1476718..1478280 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  FD987_RS07515 (FD987_07515) - 1478273..1478869 (-) 597 WP_002779313.1 CDC27 family protein -
  FD987_RS07520 (FD987_07520) ctsP 1478866..1479462 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  FD987_RS07525 (FD987_07525) ctsD 1479455..1480873 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  FD987_RS07530 (FD987_07530) ctsR 1480851..1481162 (-) 312 WP_002779316.1 hypothetical protein Machinery gene
  FD987_RS07535 (FD987_07535) nifJ 1481186..1484746 (-) 3561 WP_002779317.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  FD987_RS07540 (FD987_07540) - 1484850..1485488 (-) 639 WP_002826026.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12269.30 Da        Isoelectric Point: 6.3244

>NTDB_id=362820 FD987_RS07530 WP_002779316.1 1480851..1481162(-) (ctsR) [Campylobacter coli strain S9]
MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKDIKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKE
IILRYDTLDFKIAFKNNDKINIY

Nucleotide


Download         Length: 312 bp        

>NTDB_id=362820 FD987_RS07530 WP_002779316.1 1480851..1481162(-) (ctsR) [Campylobacter coli strain S9]
TTGTGCTTTTGCACTTTGTTATCATATGAGGATTTTGAAGAATATTTTAAGATTTTAAACACCAAGCAGAATGTAGAGCT
TGGAAATCTTCAAAATCCATTCTTTAATCCTACTTTTGAAAAAATCAAAGACATAAAAATTATTGCTATTATGCTTGATA
GAGTAAAGATTGATAATAAATGGTACAAAAAGGGTGATAAGATAGGGGAGGCCGTGATTACTGATATTACTACAAAAGAA
ATTATTTTAAGATATGATACTTTGGATTTTAAAATAGCGTTTAAAAACAATGATAAGATTAATATTTATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3K5JRX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

55.882

99.029

0.553

Multiple sequence alignment