Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   FD987_RS06960 Genome accession   NZ_CP040239
Coordinates   1363438..1364406 (+) Length   322 a.a.
NCBI ID   WP_002799191.1    Uniprot ID   A0A0Q2L7K2
Organism   Campylobacter coli strain S9     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1358438..1369406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS06935 (FD987_06935) - 1359294..1360019 (-) 726 WP_023362104.1 phosphatidate cytidylyltransferase -
  FD987_RS06940 (FD987_06940) - 1360028..1360366 (-) 339 WP_002777761.1 hypothetical protein -
  FD987_RS06945 (FD987_06945) - 1360369..1361676 (-) 1308 WP_023362106.1 NFACT family protein -
  FD987_RS06950 (FD987_06950) - 1361738..1362313 (+) 576 WP_023362108.1 molybdenum cofactor guanylyltransferase -
  FD987_RS06955 (FD987_06955) - 1362412..1363305 (+) 894 WP_079749675.1 phospholipase A -
  FD987_RS06960 (FD987_06960) ceuB 1363438..1364406 (+) 969 WP_002799191.1 ABC transporter permease Machinery gene
  FD987_RS06965 (FD987_06965) - 1364399..1365337 (+) 939 WP_023362110.1 iron chelate uptake ABC transporter family permease subunit -
  FD987_RS06970 (FD987_06970) - 1365334..1366089 (+) 756 WP_002780521.1 ABC transporter ATP-binding protein -
  FD987_RS06975 (FD987_06975) - 1366104..1367093 (+) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  FD987_RS06980 (FD987_06980) - 1367259..1367891 (+) 633 WP_002777778.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35551.38 Da        Isoelectric Point: 9.5069

>NTDB_id=362813 FD987_RS06960 WP_002799191.1 1363438..1364406(+) (ceuB) [Campylobacter coli strain S9]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=362813 FD987_RS06960 WP_002799191.1 1363438..1364406(+) (ceuB) [Campylobacter coli strain S9]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2L7K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment