Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FD428_RS13250 Genome accession   NZ_CP040234
Coordinates   2758010..2758633 (-) Length   207 a.a.
NCBI ID   WP_114848411.1    Uniprot ID   -
Organism   Citrobacter sp. TBCP-5362     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2753010..2763633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD428_RS13235 (FD428_13240) helD 2753251..2755305 (-) 2055 WP_114848410.1 DNA helicase IV -
  FD428_RS13240 (FD428_13245) - 2755429..2755875 (+) 447 WP_012132963.1 YccF domain-containing protein -
  FD428_RS13245 (FD428_13250) yccS 2755894..2758041 (+) 2148 WP_114848502.1 YccS family putative transporter -
  FD428_RS13250 (FD428_13255) sxy/tfoX 2758010..2758633 (-) 624 WP_114848411.1 TfoX/Sxy family DNA transformation protein Regulator
  FD428_RS13255 (FD428_13260) sulA 2758850..2759359 (+) 510 WP_012132966.1 SOS-induced cell division inhibitor SulA -
  FD428_RS13260 (FD428_13265) ompA 2759715..2760761 (+) 1047 WP_047463714.1 porin OmpA -
  FD428_RS13265 (FD428_13270) matP 2760836..2761288 (-) 453 WP_012132968.1 macrodomain Ter protein MatP -
  FD428_RS13270 (FD428_13275) - 2761474..2763234 (+) 1761 WP_114848412.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24000.78 Da        Isoelectric Point: 9.5783

>NTDB_id=362784 FD428_RS13250 WP_114848411.1 2758010..2758633(-) (sxy/tfoX) [Citrobacter sp. TBCP-5362]
MKLRSYDKIYKSQEYLASLGTVHYRSLFGSYSLTIEDTVFAMVAEGELYLRACEQSVAYCVKHSPVWLTFMKRGRPVMLN
YYRVDESLWRDQQQLVLLSQYSLDAAIKEKRTRFSQRRLKNLPNVTFHLENLLHEAGINDENTLRILGAKMCWLRLRESN
KLLTVKILYALEGAIVGVHEAALPAVRRQELAEWAQSLTPERQKATA

Nucleotide


Download         Length: 624 bp        

>NTDB_id=362784 FD428_RS13250 WP_114848411.1 2758010..2758633(-) (sxy/tfoX) [Citrobacter sp. TBCP-5362]
ATGAAATTACGTTCCTATGACAAGATCTATAAATCGCAAGAATATTTAGCCTCTCTGGGCACGGTTCACTATCGTTCGCT
GTTTGGTAGCTACAGCCTGACAATCGAGGATACGGTGTTTGCGATGGTGGCTGAGGGAGAACTATACCTGCGCGCCTGTG
AGCAAAGCGTCGCGTACTGCGTGAAGCATTCCCCCGTCTGGTTAACATTTATGAAACGTGGCCGTCCCGTTATGTTGAAT
TATTACCGGGTGGATGAAAGCTTATGGCGCGATCAACAACAACTGGTGCTTTTATCTCAGTATTCGCTGGATGCTGCCAT
AAAAGAAAAACGTACCCGTTTTTCACAACGTCGATTGAAGAATCTGCCAAACGTGACGTTTCATCTGGAGAACCTTCTGC
ATGAGGCCGGAATTAATGATGAAAACACATTGCGGATACTCGGCGCAAAAATGTGTTGGCTGCGGCTAAGAGAGAGCAAT
AAGCTGCTGACGGTGAAAATTCTCTATGCGTTAGAAGGGGCGATCGTTGGCGTACATGAAGCGGCGCTCCCGGCGGTACG
CCGCCAGGAGCTTGCTGAGTGGGCGCAGTCGCTTACGCCGGAGCGCCAGAAGGCGACGGCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

72.414

98.068

0.71

Multiple sequence alignment