Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3S79_RS10345 Genome accession   NZ_CP047795
Coordinates   2098756..2099226 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain UP_490     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2093756..2104226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S79_RS10325 (E3S79_10325) coaW 2094066..2094869 (+) 804 WP_160192121.1 type II pantothenate kinase -
  E3S79_RS10330 (E3S79_10330) - 2094999..2095670 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  E3S79_RS10335 (E3S79_10335) ldmS 2096068..2097261 (-) 1194 WP_000186239.1 L-aspartate--L-methionine ligase LdmS -
  E3S79_RS10340 (E3S79_10340) - 2097261..2098445 (-) 1185 WP_001291503.1 M20 family metallopeptidase -
  E3S79_RS10345 (E3S79_10345) luxS 2098756..2099226 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  E3S79_RS10350 (E3S79_10350) - 2099378..2099728 (-) 351 WP_001024033.1 membrane protein -
  E3S79_RS10355 (E3S79_10355) - 2099742..2101043 (-) 1302 WP_001242295.1 pyrimidine-nucleoside phosphorylase -
  E3S79_RS10360 (E3S79_10360) deoC 2101327..2101989 (-) 663 WP_001083321.1 deoxyribose-phosphate aldolase -
  E3S79_RS10365 (E3S79_10365) deoD 2102304..2103014 (+) 711 WP_042744365.1 purine-nucleoside phosphorylase -
  E3S79_RS10370 (E3S79_10370) - 2103135..2103578 (-) 444 WP_000070865.1 Dps family protein -
  E3S79_RS10375 (E3S79_10375) - 2103778..2104191 (-) 414 WP_001123306.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=362690 E3S79_RS10345 WP_000164421.1 2098756..2099226(+) (luxS) [Staphylococcus aureus strain UP_490]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=362690 E3S79_RS10345 WP_000164421.1 2098756..2099226(+) (luxS) [Staphylococcus aureus strain UP_490]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCTG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTACTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404