Detailed information    

insolico Bioinformatically predicted

Overview


Name   clpE   Type   Regulator
Locus tag   FD735_RS06750 Genome accession   NZ_CP040231
Coordinates   1277204..1279462 (+) Length   752 a.a.
NCBI ID   WP_139658803.1    Uniprot ID   A0A5B7Y6K4
Organism   Streptococcus sp. 1643     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1272204..1284462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS06720 (FD735_06720) - 1272989..1273762 (-) 774 WP_139658800.1 HAD hydrolase family protein -
  FD735_RS06725 (FD735_06725) - 1273767..1274624 (-) 858 WP_000057225.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  FD735_RS06730 (FD735_06730) - 1274773..1275093 (-) 321 WP_139658801.1 TfoX/Sxy family protein -
  FD735_RS06735 (FD735_06735) - 1275127..1275861 (-) 735 WP_000140921.1 amino acid ABC transporter ATP-binding protein -
  FD735_RS06740 (FD735_06740) - 1275861..1276544 (-) 684 WP_139658802.1 amino acid ABC transporter permease -
  FD735_RS06745 (FD735_06745) - 1276736..1276966 (+) 231 WP_000443577.1 DUF1797 family protein -
  FD735_RS06750 (FD735_06750) clpE 1277204..1279462 (+) 2259 WP_139658803.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  FD735_RS06755 (FD735_06755) - 1279593..1280045 (+) 453 WP_139658804.1 NUDIX hydrolase -
  FD735_RS06760 (FD735_06760) - 1280104..1280403 (+) 300 WP_000767203.1 DUF1827 family protein -
  FD735_RS06765 (FD735_06765) metK 1280471..1281661 (-) 1191 WP_139658805.1 methionine adenosyltransferase -
  FD735_RS06770 (FD735_06770) - 1281873..1283216 (-) 1344 WP_042767771.1 DEAD/DEAH box helicase -
  FD735_RS06775 (FD735_06775) - 1283321..1284136 (-) 816 WP_139658806.1 endonuclease/exonuclease/phosphatase family protein -

Sequence


Protein


Download         Length: 752 a.a.        Molecular weight: 83866.26 Da        Isoelectric Point: 5.0311

>NTDB_id=362653 FD735_RS06750 WP_139658803.1 1277204..1279462(+) (clpE) [Streptococcus sp. 1643]
MLCQNCKINDSTIHLYTNINGQQKQIDLCQNCYKIIKTDPNNTLFKGMTDLNNHDFDPFGDFFNDLNNFKPSSNNVPPTQ
SGGGYGGSGGYGPQNRGPLQTPPSQERGLLEEYGINITEIARRGDIDPVIGRDEEIIRVIEILNRRTKNNPVLIGEPGVG
KTAVVEGLAQKIVDGDVPHKLQGKQVIRLDVVSLVQGTGIRGQFEERMQKLMEEIRKREDIILFIDEIHEIVGAGSAGDG
NMDAGNILKPALARGELQLVGATTLNEYRIIEKDAALERRMQPVKVDEPTVEETIIILKGVQKKYEDYHHVKYTDAAIEA
AANLSNRYIQDRFLPDKAIDLLDEAGSKMNLTLNFVDPKVIDQRLIEAENLKAQATREEDFEKAAYFRDQIAKYKEMQKN
KVTDQDTPIISEKTIEHIIEQKTNIPVGELKEKEQSQLIHLADDLKAHVIGQDEAVDKIAKAIRRNRVGLGTPNRPIGSF
LFVGPTGVGKTELSKQLAIELFGSADSMIRFDMSEYMEKHSVAKLVGAPPGYVGYDEAGQLTEKVRRNPYSLILLDEVEK
AHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKAEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDGI
IEFKPLSKDNLLQIVELMLADVNKRLSSNNIHLDVTDKVKEKLVDLGYDPKMGARPLRRTIQDYIEDAITDFYLENPSEK
TLKAVMTSNGNIQIKSAKKTEKTEEIASEIEE

Nucleotide


Download         Length: 2259 bp        

>NTDB_id=362653 FD735_RS06750 WP_139658803.1 1277204..1279462(+) (clpE) [Streptococcus sp. 1643]
ATGCTCTGTCAAAACTGTAAAATTAACGACTCAACAATTCATCTGTATACCAATATCAATGGACAGCAAAAGCAAATTGA
TCTCTGTCAAAATTGCTATAAAATTATCAAAACAGATCCAAATAATACCCTCTTTAAAGGAATGACTGACTTAAATAATC
ATGACTTTGATCCCTTCGGCGACTTTTTCAATGATTTGAACAATTTCAAACCTTCTTCTAATAACGTCCCTCCAACTCAA
TCTGGTGGGGGATACGGAGGAAGCGGTGGTTATGGGCCTCAAAACCGCGGCCCACTTCAAACACCTCCTAGCCAAGAAAG
AGGACTCTTAGAGGAATATGGTATCAATATTACTGAGATTGCTCGTCGGGGAGATATTGACCCTGTTATTGGTCGAGATG
AGGAGATTATCCGCGTTATCGAAATCCTCAACCGTCGAACCAAGAACAACCCTGTCCTTATCGGAGAACCAGGTGTTGGT
AAAACAGCCGTTGTTGAAGGTCTAGCTCAGAAGATTGTTGATGGCGATGTTCCCCATAAACTCCAAGGCAAGCAGGTCAT
CCGTCTGGATGTGGTCAGTCTAGTCCAAGGAACAGGGATTCGAGGCCAATTTGAAGAACGAATGCAAAAGCTCATGGAAG
AAATTCGCAAACGCGAGGACATCATCCTCTTTATCGACGAAATCCATGAAATTGTTGGTGCAGGGTCAGCAGGCGATGGC
AATATGGATGCTGGCAATATCCTCAAACCTGCCCTTGCCCGTGGTGAATTGCAACTGGTCGGAGCCACTACTCTCAATGA
ATACCGCATCATTGAAAAAGATGCCGCCCTAGAGCGCCGTATGCAACCTGTCAAGGTAGATGAACCAACTGTCGAAGAAA
CCATTATCATCCTTAAAGGGGTTCAAAAGAAATACGAAGACTACCATCACGTCAAGTATACTGATGCTGCTATCGAAGCT
GCTGCAAATCTTTCCAACCGCTATATCCAAGATCGCTTCTTGCCAGACAAGGCTATTGACCTGTTGGATGAAGCTGGTTC
TAAGATGAATCTGACACTGAACTTTGTTGATCCTAAAGTGATTGATCAGCGTTTAATAGAAGCTGAAAATCTCAAGGCGC
AAGCTACACGAGAGGAAGACTTTGAAAAGGCTGCTTATTTCCGCGATCAGATTGCCAAGTACAAAGAAATGCAAAAGAAC
AAGGTGACCGATCAGGATACTCCAATCATTAGCGAGAAAACCATCGAACATATCATTGAGCAAAAAACCAATATCCCTGT
TGGAGAACTCAAAGAAAAAGAACAGTCTCAGCTTATCCATCTAGCAGACGACCTCAAAGCTCATGTCATTGGTCAAGATG
AAGCTGTCGATAAGATTGCCAAGGCCATCCGTCGTAATCGTGTTGGACTTGGAACTCCTAACCGGCCAATCGGAAGCTTC
CTCTTTGTCGGACCAACTGGTGTCGGTAAGACAGAACTTTCCAAACAACTAGCCATTGAACTTTTTGGTTCAGCTGATAG
CATGATTCGCTTTGATATGAGTGAATACATGGAAAAACACAGTGTGGCTAAATTGGTCGGAGCCCCTCCAGGTTATGTCG
GCTATGATGAAGCTGGTCAGTTAACGGAAAAAGTTCGTCGCAATCCATATTCTCTCATCCTTCTCGATGAAGTCGAGAAA
GCCCATCCAGATGTGATGCACATGTTCCTTCAAGTCTTGGACGATGGTCGTTTGACTGATGGGCAAGGACGTACAGTTAG
CTTTAAGGATGCTATCATTATCATGACCTCAAATGCGGGTACTGGAAAGGCCGAAGCCAGTGTTGGGTTTGGAGCTGCTC
GTGAAGGACGTACTAATTCTGTTCTTGGTGAACTTGGTAACTTCTTTAGTCCTGAGTTTATGAACCGTTTTGACGGCATC
ATCGAATTTAAACCTCTCAGCAAGGACAACCTTCTCCAAATCGTCGAACTCATGCTAGCGGATGTCAACAAACGCCTCTC
TAGCAACAATATCCACCTCGATGTGACTGACAAAGTCAAGGAAAAGTTGGTTGACCTAGGTTATGATCCAAAAATGGGGG
CGCGCCCACTCCGCCGCACCATTCAAGACTATATCGAGGATGCCATCACTGACTTCTACCTTGAAAATCCAAGTGAGAAA
ACCCTCAAGGCAGTTATGACAAGTAATGGTAATATTCAAATCAAATCTGCCAAAAAAACTGAGAAAACAGAAGAGATTGC
TTCTGAAATAGAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5B7Y6K4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

94.624

98.936

0.936

  clpE Streptococcus pneumoniae D39

94.624

98.936

0.936

  clpE Streptococcus pneumoniae R6

94.624

98.936

0.936

  clpE Streptococcus pneumoniae TIGR4

94.489

98.936

0.935

  clpE Streptococcus mutans UA159

83.156

100

0.834

  clpC Lactococcus lactis subsp. cremoris KW2

76.026

100

0.763

  clpC Bacillus subtilis subsp. subtilis str. 168

52.462

86.436

0.453

  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.889

87.633

0.411

  clpC Streptococcus mutans UA159

46.334

85.239

0.395

  clpC Streptococcus thermophilus LMD-9

46.751

83.91

0.392

  clpC Streptococcus thermophilus LMG 18311

46.508

83.777

0.39

  clpC Streptococcus pneumoniae TIGR4

47.182

82.58

0.39

  clpC Streptococcus pneumoniae Rx1

47.182

82.58

0.39

  clpC Streptococcus pneumoniae D39

47.182

82.58

0.39


Multiple sequence alignment