Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3S81_RS13225 Genome accession   NZ_CP047794
Coordinates   2697844..2698314 (-) Length   156 a.a.
NCBI ID   WP_047213680.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_551     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2692844..2703314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S81_RS13195 (E3S81_13195) - 2692883..2693296 (+) 414 WP_001123308.1 thiol-disulfide oxidoreductase DCC family protein -
  E3S81_RS13200 (E3S81_13200) - 2693496..2693939 (+) 444 WP_000070865.1 Dps family protein -
  E3S81_RS13205 (E3S81_13205) deoD 2694060..2694770 (-) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  E3S81_RS13210 (E3S81_13210) deoC 2695084..2695746 (+) 663 WP_001083326.1 deoxyribose-phosphate aldolase -
  E3S81_RS13215 (E3S81_13215) - 2696026..2697327 (+) 1302 WP_001242306.1 pyrimidine-nucleoside phosphorylase -
  E3S81_RS13220 (E3S81_13220) - 2697341..2697691 (+) 351 WP_001024034.1 membrane protein -
  E3S81_RS13225 (E3S81_13225) luxS 2697844..2698314 (-) 471 WP_047213680.1 S-ribosylhomocysteine lyase Regulator
  E3S81_RS13230 (E3S81_13230) - 2698624..2699808 (+) 1185 WP_086098803.1 M20 family metallopeptidase -
  E3S81_RS13235 (E3S81_13235) ldmS 2699808..2701001 (+) 1194 WP_000183713.1 L-aspartate--L-methionine ligase LdmS -
  E3S81_RS13240 (E3S81_13240) - 2701400..2702071 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  E3S81_RS13245 (E3S81_13245) coaW 2702201..2703004 (-) 804 WP_000862728.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17541.81 Da        Isoelectric Point: 5.4567

>NTDB_id=362605 E3S81_RS13225 WP_047213680.1 2697844..2698314(-) (luxS) [Staphylococcus aureus strain UP_551]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQVFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=362605 E3S81_RS13225 WP_047213680.1 2697844..2698314(-) (luxS) [Staphylococcus aureus strain UP_551]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATATGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GATTGCATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGTATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404