Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   FD482_RS09945 Genome accession   NZ_CP040229
Coordinates   2018979..2019695 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain GD487     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2013979..2024695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD482_RS09915 (FD482_10195) - 2014246..2014872 (+) 627 WP_000522384.1 nitroreductase family protein -
  FD482_RS09920 (FD482_10200) - 2015180..2015965 (+) 786 WP_000867947.1 carbon-nitrogen family hydrolase -
  FD482_RS13815 hld 2016567..2016647 (-) 81 WP_000046022.1 delta-hemolysin -
  FD482_RS09930 (FD482_10210) agrB 2016937..2017506 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  FD482_RS09935 (FD482_10215) agrD 2017503..2017643 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  FD482_RS09940 (FD482_10220) agrC 2017668..2018960 (+) 1293 WP_001825886.1 quorum-sensing sensor histidine kinase AgrC -
  FD482_RS09945 (FD482_10225) agrA 2018979..2019695 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  FD482_RS09950 (FD482_10230) - 2020069..2021028 (-) 960 WP_001253294.1 carbohydrate kinase -
  FD482_RS09955 (FD482_10235) - 2021025..2022509 (-) 1485 WP_000141407.1 sucrose-6-phosphate hydrolase -
  FD482_RS09960 (FD482_10240) - 2022658..2023608 (-) 951 WP_000790325.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=362561 FD482_RS09945 WP_000688492.1 2018979..2019695(+) (agrA) [Staphylococcus aureus strain GD487]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=362561 FD482_RS09945 WP_000688492.1 2018979..2019695(+) (agrA) [Staphylococcus aureus strain GD487]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGTCATAATATCGAATCTATTG
ATTCGAAAGAGCGTATTGTTTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1

Multiple sequence alignment