Detailed information NTG0362459

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FDZ90_RS12520
• Genome accession: NZ_CP040172
• Coordinates: 2583638..2584645 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain VC1374
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2578638..2589645

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDZ90_RS12510 (FDZ90_12880)	cysM	2579802..2580689 (+)	888	WP_001279365.1	cysteine synthase CysM	-
FDZ90_RS12515 (FDZ90_12885)	mutS	2580957..2583545 (+)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
FDZ90_RS12520 (FDZ90_12890)	rpoS	2583638..2584645 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
FDZ90_RS12525 (FDZ90_12895)	nlpD	2584719..2585654 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
FDZ90_RS12530 (FDZ90_12900)	-	2585654..2586280 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FDZ90_RS12535 (FDZ90_12905)	surE	2586273..2587025 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
FDZ90_RS12540 (FDZ90_12910)	truD	2587027..2588112 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
FDZ90_RS12545 (FDZ90_12915)	ispF	2588142..2588618 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FDZ90_RS12550 (FDZ90_12920)	ispD	2588615..2589313 (-)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FDZ90_RS12555 (FDZ90_12925)	ftsB	2589310..2589594 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=362459 FDZ90_RS12520 WP_000116737.1 2583638..2584645(-) (rpoS) [Vibrio cholerae strain VC1374]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=362459 FDZ90_RS12520 WP_000116737.1 2583638..2584645(-) (rpoS) [Vibrio cholerae strain VC1374]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1