Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | FDZ90_RS02175 | Genome accession | NZ_CP040172 |
| Coordinates | 278936..279454 (+) | Length | 172 a.a. |
| NCBI ID | WP_000792032.1 | Uniprot ID | - |
| Organism | Vibrio cholerae strain VC1374 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 273936..284454
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS02155 (FDZ90_02250) | - | 274153..276630 (-) | 2478 | WP_000668733.1 | penicillin-binding protein 1A | - |
| FDZ90_RS02160 (FDZ90_02255) | pilM | 276773..277789 (+) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| FDZ90_RS02165 (FDZ90_02260) | pilN | 277779..278363 (+) | 585 | WP_000902745.1 | PilN domain-containing protein | Machinery gene |
| FDZ90_RS02170 (FDZ90_02265) | pilO | 278356..278946 (+) | 591 | WP_000157690.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FDZ90_RS02175 (FDZ90_02270) | pilP | 278936..279454 (+) | 519 | WP_000792032.1 | pilus assembly protein PilP | Machinery gene |
| FDZ90_RS02180 (FDZ90_02275) | pilQ | 279480..281195 (+) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| FDZ90_RS02185 (FDZ90_02280) | aroK | 281382..281906 (+) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| FDZ90_RS02190 (FDZ90_02285) | aroB | 281934..283019 (+) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19084.25 Da Isoelectric Point: 10.0857
>NTDB_id=362433 FDZ90_RS02175 WP_000792032.1 278936..279454(+) (pilP) [Vibrio cholerae strain VC1374]
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
MKNKPLGLWLMSLLVLVGCKANQDDLTSYVAQVEREARKEVTKLKPILEFEATPYQQHKGREPFVLPKEALVQNQPLAKA
DCWQPVPRAKNGPLERYPLHQLRLKGVMSSGGSISALVQTPAGSVVKVKAGQYVGINNGKVTRVDDNYLLINETLPDGLG
CWNQRNVKLALK
Nucleotide
Download Length: 519 bp
>NTDB_id=362433 FDZ90_RS02175 WP_000792032.1 278936..279454(+) (pilP) [Vibrio cholerae strain VC1374]
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
ATGAAAAATAAGCCACTTGGATTATGGCTGATGAGTTTGCTGGTGTTGGTCGGGTGTAAGGCGAACCAAGATGATTTGAC
CTCATACGTCGCGCAAGTTGAGCGTGAAGCGCGCAAAGAAGTAACTAAGCTCAAACCCATTTTAGAGTTTGAAGCCACGC
CCTATCAGCAGCACAAGGGGCGTGAGCCGTTTGTCTTACCGAAAGAAGCGTTAGTGCAAAACCAACCGCTGGCCAAAGCC
GACTGTTGGCAACCCGTGCCACGTGCGAAAAATGGGCCGTTGGAGCGTTATCCATTGCACCAATTGCGCTTAAAAGGGGT
GATGAGCAGCGGGGGCAGTATCTCTGCCTTAGTGCAAACGCCGGCAGGGAGTGTGGTCAAGGTTAAGGCGGGTCAATATG
TCGGAATCAATAATGGCAAAGTCACCCGAGTCGACGACAACTATTTGTTAATTAATGAAACTTTGCCTGATGGCTTAGGG
TGTTGGAATCAGCGTAACGTCAAGCTGGCTTTAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio cholerae strain A1552 |
100 |
100 |
1 |
| pilP | Vibrio campbellii strain DS40M4 |
56.395 |
100 |
0.564 |