Detailed information NTG0362429

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FDZ90_RS01970
• Genome accession: NZ_CP040172
• Coordinates: 237318..238325 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain VC1374
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232318..243325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDZ90_RS01950 (FDZ90_02040)	metJ	232322..232639 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
FDZ90_RS01955 (FDZ90_02045)	-	232750..234027 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
FDZ90_RS01960 (FDZ90_02050)	rpmE	234335..234553 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
FDZ90_RS01965 (FDZ90_02055)	priA	234808..237012 (+)	2205	WP_001247858.1	primosomal protein N'	-
FDZ90_RS01970 (FDZ90_02060)	cytR	237318..238325 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
FDZ90_RS01975 (FDZ90_02065)	-	238497..239048 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
FDZ90_RS01980 (FDZ90_02070)	hslV	239185..239742 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
FDZ90_RS01985 (FDZ90_02075)	hslU	239808..241139 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
FDZ90_RS01990 (FDZ90_02080)	-	241243..242160 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FDZ90_RS01995 (FDZ90_02085)	rraA	242235..242750 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=362429 FDZ90_RS01970 WP_000224452.1 237318..238325(+) (cytR) [Vibrio cholerae strain VC1374]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=362429 FDZ90_RS01970 WP_000224452.1 237318..238325(+) (cytR) [Vibrio cholerae strain VC1374]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904