Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3S88_RS09160 Genome accession   NZ_CP047792
Coordinates   1829099..1829569 (+) Length   156 a.a.
NCBI ID   WP_000164421.1    Uniprot ID   P65329
Organism   Staphylococcus aureus strain UP_794     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1824099..1834569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S88_RS09140 (E3S88_09140) coaW 1824408..1825211 (+) 804 WP_000862728.1 type II pantothenate kinase -
  E3S88_RS09145 (E3S88_09145) - 1825341..1826012 (-) 672 WP_000120549.1 DUF2750 domain-containing protein -
  E3S88_RS09150 (E3S88_09150) ldmS 1826411..1827604 (-) 1194 WP_124779861.1 L-aspartate--L-methionine ligase LdmS -
  E3S88_RS09155 (E3S88_09155) - 1827604..1828788 (-) 1185 WP_001291502.1 M20 family metallopeptidase -
  E3S88_RS09160 (E3S88_09160) luxS 1829099..1829569 (+) 471 WP_000164421.1 S-ribosylhomocysteine lyase Regulator
  E3S88_RS09165 (E3S88_09165) - 1829722..1830072 (-) 351 WP_001024035.1 membrane protein -
  E3S88_RS09170 (E3S88_09170) - 1830086..1831387 (-) 1302 WP_124779857.1 pyrimidine-nucleoside phosphorylase -
  E3S88_RS09175 (E3S88_09175) deoC 1831667..1832329 (-) 663 WP_160194576.1 deoxyribose-phosphate aldolase -
  E3S88_RS09180 (E3S88_09180) deoD 1832643..1833353 (+) 711 WP_000160304.1 purine-nucleoside phosphorylase -
  E3S88_RS09185 (E3S88_09185) - 1833474..1833917 (-) 444 WP_000070865.1 Dps family protein -
  E3S88_RS09190 (E3S88_09190) - 1834117..1834530 (-) 414 WP_001123306.1 thiol-disulfide oxidoreductase DCC family protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17513.76 Da        Isoelectric Point: 5.4567

>NTDB_id=362420 E3S88_RS09160 WP_000164421.1 1829099..1829569(+) (luxS) [Staphylococcus aureus strain UP_794]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNDVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=362420 E3S88_RS09160 WP_000164421.1 1829099..1829569(+) (luxS) [Staphylococcus aureus strain UP_794]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAAGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGACTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCAG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTCGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TGATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65329

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

44.681

90.385

0.404