Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   E6P00_RS13275 Genome accession   NZ_CP040127
Coordinates   2257426..2258061 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain PA298     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2252426..2263061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E6P00_RS13260 (E6P00_13260) - 2253132..2254376 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  E6P00_RS13265 (E6P00_13265) - 2254464..2254997 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  E6P00_RS13270 (E6P00_13270) comA 2255128..2257353 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  E6P00_RS13275 (E6P00_13275) exbB 2257426..2258061 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  E6P00_RS13280 (E6P00_13280) - 2258058..2258498 (+) 441 WP_019726515.1 biopolymer transporter ExbD -
  E6P00_RS13285 (E6P00_13285) lpxK 2258498..2259496 (+) 999 WP_019726514.1 tetraacyldisaccharide 4'-kinase -
  E6P00_RS13290 (E6P00_13290) - 2259534..2259719 (+) 186 WP_003091157.1 Trm112 family protein -
  E6P00_RS13295 (E6P00_13295) kdsB 2259719..2260483 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  E6P00_RS13300 (E6P00_13300) - 2260483..2260947 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  E6P00_RS13305 (E6P00_13305) murB 2260944..2261963 (+) 1020 WP_019726513.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=362363 E6P00_RS13275 WP_003091163.1 2257426..2258061(+) (exbB) [Pseudomonas aeruginosa strain PA298]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=362363 E6P00_RS13275 WP_003091163.1 2257426..2258061(+) (exbB) [Pseudomonas aeruginosa strain PA298]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81

Multiple sequence alignment