Detailed information NTG0036230

Bioinformatically predicted

Overview

• Name: epdL
• Type: Machinery gene
• Locus tag: FERP_RS03920
• Genome accession: NC_013849
• Coordinates: 689506..691056 (+)
• Length: 516 a.a.
• NCBI ID: WP_012965295.1
• Uniprot ID: D3RWT9
• Organism: Ferroglobus placidus DSM 10642
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 684506..696056

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FERP_RS03900 (Ferp_0779)	-	684704..686287 (+)	1584	WP_012965291.1	sodium:solute symporter	-
FERP_RS03905 (Ferp_0780)	-	686337..686948 (-)	612	WP_012965292.1	hypothetical protein	-
FERP_RS03910 (Ferp_0781)	-	686961..687821 (-)	861	WP_012965293.1	KaiC domain-containing protein	-
FERP_RS03915 (Ferp_0782)	-	687945..689522 (+)	1578	WP_012965294.1	GTPBP1 family GTP-binding protein	-
FERP_RS03920 (Ferp_0783)	epdL	689506..691056 (+)	1551	WP_012965295.1	type II/IV secretion system ATPase subunit	Machinery gene
FERP_RS03925 (Ferp_0784)	-	691053..691679 (+)	627	WP_012965296.1	hypothetical protein	-
FERP_RS03930 (Ferp_0785)	-	691704..692486 (+)	783	WP_012965297.1	rhomboid family intramembrane serine protease	-
FERP_RS03935 (Ferp_0786)	-	692483..693400 (+)	918	WP_012965298.1	archaeosine biosynthesis radical SAM protein RaSEA	-

Sequence

Protein

• Length: 516 a.a.
• Molecular weight: 60179.26 Da
• Isoelectric Point: 5.7006

>NTDB_id=36230 FERP_RS03920 WP_012965295.1 689506..691056(+) (epdL) [Ferroglobus placidus DSM 10642]
MKLNLKVKLKREESERERMKNFKEFTEVIKEKAEIPEGYEIVEDYEVLGDFEFSVVFILKRDHDYFYHAVEPILEEDYEK
YREEIIKRVEYALPYYADFKDKAKTILSSYDRLLEALNLDPDDYHYYALLYYLLRDTILFGPITPLMKDRLLEDISCNGY
GKPIYVYHRNYQNLRTNVVFSEDELDSFIIKLAQQCGKHISIAEPMLDATLPDGSRIQMTLGREVTDHGSTFTIRKFRDV
PLTPIDLIAWKTFSLEEMAYLWLCIENKKNLIFAGGTASGKTTSMNAISLFIPKNAKIVSIEDTREVMLPHENWIPAVTR
EGVGGKEIDMYELLRAALRQRPEYIIVGEVRGKEALTLFQAMSTGHTTYSTLHADSVNGVIHRLENPPINVPRSMIEALD
IISIQAQVYLGNKRVRRNLEIAEIVGMDPHTKIIKTTTVFAWDSEKDEHLMIGSSKVLEEIRKMRAWSRKELEEELETRK
KVLKWMLDNNIRDYKEVAKIIHSYQSDKDRLLEMIS

Nucleotide

• Length: 1551 bp

>NTDB_id=36230 FERP_RS03920 WP_012965295.1 689506..691056(+) (epdL) [Ferroglobus placidus DSM 10642]
ATGAAACTGAATCTTAAAGTTAAGCTGAAAAGAGAAGAGAGCGAAAGAGAAAGAATGAAAAATTTCAAGGAATTTACGGA
AGTCATAAAAGAGAAGGCTGAGATTCCAGAGGGTTACGAAATTGTAGAAGATTACGAAGTTCTCGGAGACTTCGAGTTTT
CGGTAGTTTTCATTTTAAAGAGAGATCACGACTATTTTTACCACGCTGTCGAGCCGATTCTCGAGGAAGATTACGAGAAG
TACAGAGAGGAGATAATTAAGAGGGTCGAGTACGCACTTCCTTACTATGCGGATTTTAAGGATAAGGCAAAAACGATACT
TTCGAGCTACGACAGGCTTCTCGAAGCTTTAAACCTCGATCCAGACGACTACCACTACTACGCTCTCCTCTACTATTTGC
TAAGAGACACGATCCTCTTCGGACCAATCACTCCTCTTATGAAGGATCGTCTGCTTGAGGATATAAGCTGTAACGGGTAC
GGCAAGCCTATTTACGTTTATCACCGCAACTATCAGAACTTGCGGACGAACGTTGTTTTTTCCGAGGACGAGCTCGACAG
CTTCATAATCAAGCTTGCCCAGCAGTGCGGGAAGCACATAAGCATAGCTGAGCCTATGCTCGACGCTACTCTTCCGGACG
GAAGCAGAATTCAGATGACTCTGGGGAGAGAAGTAACTGACCACGGCTCGACCTTCACGATAAGAAAATTCAGAGACGTT
CCTCTTACTCCTATAGACCTAATAGCTTGGAAAACGTTCAGCTTGGAGGAAATGGCTTACCTCTGGCTGTGCATAGAAAA
CAAAAAGAACTTGATATTCGCAGGAGGAACTGCAAGCGGTAAAACGACGAGCATGAACGCAATAAGCCTATTCATTCCGA
AGAACGCTAAAATCGTGAGCATAGAAGATACGAGAGAAGTAATGCTCCCCCACGAAAACTGGATTCCGGCTGTGACGAGA
GAAGGTGTCGGAGGGAAAGAGATTGACATGTACGAGCTGCTCAGAGCAGCTCTGAGACAGAGACCGGAGTACATAATAGT
CGGAGAAGTCAGAGGTAAGGAAGCTCTAACTCTGTTCCAGGCTATGTCAACCGGACACACAACTTACTCGACTTTGCATG
CGGACAGCGTGAACGGAGTAATTCATCGATTGGAGAACCCGCCGATAAACGTGCCGAGGAGCATGATAGAGGCTCTCGAC
ATAATAAGCATACAAGCTCAAGTTTACCTCGGAAATAAAAGAGTGAGAAGAAATTTGGAAATAGCAGAAATAGTGGGAAT
GGACCCCCACACAAAGATAATAAAGACTACAACAGTCTTCGCTTGGGACAGCGAAAAAGACGAACACTTAATGATAGGCT
CCTCAAAAGTTCTCGAAGAAATAAGAAAAATGAGAGCTTGGAGCAGAAAAGAACTGGAAGAAGAACTCGAAACAAGAAAA
AAAGTCCTGAAGTGGATGCTCGATAACAATATCAGAGACTACAAAGAAGTAGCTAAAATAATTCACTCGTATCAGAGCGA
TAAGGATAGACTGCTCGAAATGATCTCATGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (152-388)

3D structure

• AlphaFold DB: D3RWT9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdL	Methanoculleus thermophilus strain DSM 2373	51.134	93.992	0.481