Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   FERP_RS01280 Genome accession   NC_013849
Coordinates   219571..221097 (+) Length   508 a.a.
NCBI ID   WP_012964781.1    Uniprot ID   D3S1X7
Organism   Ferroglobus placidus DSM 10642     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 214571..226097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FERP_RS01250 (Ferp_0246) - 214780..215604 (+) 825 WP_012964775.1 diadenylate cyclase -
  FERP_RS01255 (Ferp_0247) - 215605..216756 (+) 1152 WP_012964776.1 ArsA family ATPase -
  FERP_RS01260 (Ferp_0248) - 216788..216970 (+) 183 WP_012964777.1 hypothetical protein -
  FERP_RS01265 (Ferp_0249) - 216967..217602 (+) 636 WP_012964778.1 PrsW family intramembrane metalloprotease -
  FERP_RS01270 (Ferp_0250) gatB 217635..219056 (+) 1422 WP_012964779.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FERP_RS01275 (Ferp_0251) - 219049..219420 (-) 372 WP_012964780.1 response regulator -
  FERP_RS01280 (Ferp_0252) epdL 219571..221097 (+) 1527 WP_012964781.1 type II/IV secretion system ATPase subunit Machinery gene
  FERP_RS01285 (Ferp_0253) - 221094..222995 (+) 1902 WP_012964782.1 type II secretion system F family protein -
  FERP_RS01290 (Ferp_0254) - 222957..223775 (-) 819 WP_052299944.1 DMT family transporter -
  FERP_RS01295 (Ferp_0255) - 224160..224453 (-) 294 WP_012964784.1 winged helix-turn-helix domain-containing protein -
  FERP_RS01300 (Ferp_0256) - 224491..225207 (-) 717 WP_012964785.1 hypothetical protein -
  FERP_RS01305 - 225231..225467 (-) 237 WP_048086335.1 type II toxin-antitoxin system CcdA family antitoxin -
  FERP_RS01310 (Ferp_0257) - 225663..225977 (-) 315 WP_148212083.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 58915.74 Da        Isoelectric Point: 5.0571

>NTDB_id=36229 FERP_RS01280 WP_012964781.1 219571..221097(+) (epdL) [Ferroglobus placidus DSM 10642]
MLKLKLRKKEKDEKEVPQEVDEVPIDVNFPEGYEVAEDYWIEEPYSKIFILFDPKEEEYLYYVSTPVLNEYEKSIYYVVE
DLIPEFVSSDTEDKVGYLRSVFEEIVKDIGFKLSEISKEKIFYYLKCDFIEFGPITPLMKDRLLEDISCNGYGKPIYVYH
RNYQNLRTNVVFSEDELDSFIIKLAQQCGKHISIAEPMLDATLPDGSRIQMTLGREVTDHGSTFTIRKFRDVPLTPIDLI
AWRTFSLEEMAYLWLCIENKKNLIFAGGTASGKTTSMNAISLFIPKNAKIVSIEDTREVMLPHENWIPAVTREGVGGKEI
DMYELLRAALRQRPEYIIVGEVRGKEALTLFQAMSTGHTTYSTLHADSVNGVIHRLENPPINVPRSMIEALDIISIQAQV
YLGNKRVRRNLEIAEIVGMDPHTKIIKTTTVFAWDSEKDEHLMIGSSKVLEEIRKMRAWSRRELEEELETRKKVLKWMLD
NNIRDYKEVAKIIHSYQSDKDSVLRMIS

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=36229 FERP_RS01280 WP_012964781.1 219571..221097(+) (epdL) [Ferroglobus placidus DSM 10642]
ATGCTAAAACTGAAGCTCCGAAAAAAGGAAAAAGACGAAAAAGAAGTTCCTCAAGAAGTTGACGAAGTTCCTATAGACGT
TAACTTTCCCGAAGGTTACGAGGTTGCAGAGGACTACTGGATAGAGGAGCCATACTCCAAAATCTTCATCTTATTCGATC
CGAAGGAGGAGGAGTATTTATACTACGTCTCAACACCCGTTCTGAACGAATACGAGAAGTCGATATACTACGTCGTCGAA
GATCTAATTCCAGAATTCGTTTCCTCCGACACCGAAGATAAGGTTGGGTATTTGAGAAGCGTTTTCGAGGAAATTGTGAA
AGACATAGGATTCAAACTTTCGGAAATCTCAAAGGAGAAGATATTTTACTACTTAAAATGTGACTTCATAGAGTTCGGAC
CGATCACTCCTCTTATGAAGGATCGTCTGCTTGAGGATATAAGCTGTAACGGGTACGGCAAGCCTATTTATGTTTATCAC
CGCAACTATCAGAACTTGCGGACGAACGTTGTTTTTTCCGAGGACGAGCTCGACAGCTTCATAATCAAGCTTGCCCAGCA
GTGCGGGAAGCACATAAGCATAGCTGAGCCTATGCTCGATGCTACTCTGCCAGACGGAAGCAGAATTCAGATGACTCTGG
GGAGAGAAGTAACTGACCACGGCTCGACGTTCACGATAAGAAAATTCAGAGACGTTCCTCTTACTCCTATAGACCTAATA
GCTTGGAGAACCTTCAGCTTGGAGGAAATGGCTTACCTCTGGCTGTGCATAGAAAACAAAAAGAACTTGATATTCGCCGG
AGGAACTGCAAGCGGTAAAACGACGAGCATGAACGCAATAAGCCTATTCATTCCGAAGAACGCTAAGATCGTGAGCATAG
AAGATACGAGAGAAGTAATGCTCCCCCACGAAAACTGGATTCCGGCTGTGACGAGAGAAGGTGTTGGAGGGAAAGAGATA
GACATGTACGAGCTGCTCAGAGCAGCTCTGAGACAGAGACCTGAGTACATAATAGTCGGAGAAGTTAGAGGTAAGGAAGC
TCTAACTCTGTTCCAGGCTATGTCAACCGGACACACAACCTATTCCACTTTGCATGCGGACAGCGTGAACGGAGTAATTC
ATCGATTGGAGAATCCGCCGATAAACGTGCCGAGGAGCATGATAGAAGCTCTCGACATAATAAGCATACAAGCTCAGGTT
TACCTCGGAAATAAAAGAGTGAGAAGAAATTTGGAAATAGCAGAAATAGTGGGAATGGACCCCCACACAAAGATAATAAA
GACTACAACAGTCTTCGCTTGGGACAGCGAAAAAGACGAACACCTAATGATCGGCTCCTCAAAAGTTCTCGAAGAAATAA
GAAAAATGAGAGCTTGGAGCAGAAGAGAACTGGAAGAAGAACTCGAAACAAGAAAAAAAGTCCTGAAGTGGATGCTCGAT
AACAACATCAGAGACTACAAAGAAGTAGCTAAAATAATTCACTCGTATCAGAGCGATAAGGATAGCGTTTTGAGGATGAT
CTCATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(144-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3S1X7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

52.165

95.472

0.498

Multiple sequence alignment