Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   BJ6T_RS10530 Genome accession   NC_017249
Coordinates   2253942..2255000 (-) Length   352 a.a.
NCBI ID   WP_014492331.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum USDA 6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2248942..2260000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJ6T_RS43215 (BJ6T_21780) - 2249756..2250121 (-) 366 WP_014492324.1 hypothetical protein -
  BJ6T_RS47090 (BJ6T_21790) - 2250440..2250811 (+) 372 WP_014492325.1 hypothetical protein -
  BJ6T_RS48200 (BJ6T_21800) - 2250774..2251244 (+) 471 WP_014492326.1 hypothetical protein -
  BJ6T_RS48205 (BJ6T_21810) - 2251291..2251500 (+) 210 WP_014492327.1 hypothetical protein -
  BJ6T_RS47095 (BJ6T_21820) - 2251789..2251974 (+) 186 WP_014492328.1 hypothetical protein -
  BJ6T_RS10520 (BJ6T_21830) ybgC 2252197..2252640 (+) 444 WP_011089947.1 tol-pal system-associated acyl-CoA thioesterase -
  BJ6T_RS45450 - 2252717..2252806 (-) 90 Protein_2149 acyl-CoA thioester hydrolase -
  BJ6T_RS10525 (BJ6T_21850) - 2252876..2253790 (-) 915 WP_014492330.1 metallophosphoesterase -
  BJ6T_RS10530 (BJ6T_21860) ruvB 2253942..2255000 (-) 1059 WP_014492331.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  BJ6T_RS10535 (BJ6T_21870) ruvA 2254997..2255614 (-) 618 WP_014492332.1 Holliday junction branch migration protein RuvA -
  BJ6T_RS10540 (BJ6T_21880) ruvC 2255611..2256138 (-) 528 WP_014492333.1 crossover junction endodeoxyribonuclease RuvC -
  BJ6T_RS10545 (BJ6T_21890) - 2256395..2257141 (-) 747 WP_014492334.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BJ6T_RS10550 (BJ6T_21900) - 2257345..2259093 (+) 1749 WP_014492335.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38084.30 Da        Isoelectric Point: 5.5148

>NTDB_id=36229 BJ6T_RS10530 WP_014492331.1 2253942..2255000(-) (ruvB) [Bradyrhizobium japonicum USDA 6]
MSDPKANRMVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVLFVGPPGLGKTTLAQIVAKEL
GVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLSPAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVG
ATTRAGLLTNPLRDRFGIPVRLNFYTIEELESIVTRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADA
ASIDRKIADHALSALEVDAAGLDAMDRRYLTTIAQNYGGGPVGVETMAAALSEPRDAIEDIIEPYLIQCGYLQRTPRGRL
LTSHAFRHLGIAEPSRDAAAQFGLFGTDESDD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=36229 BJ6T_RS10530 WP_014492331.1 2253942..2255000(-) (ruvB) [Bradyrhizobium japonicum USDA 6]
GTGAGCGACCCCAAGGCCAACCGCATGGTCTCGCCCGAGCGCCGCAGCGACGATGTCGGCGACACCGCGCTGCGTCCGCA
ATCGCTGTCCGACTTCGTCGGCCAGCAGCAGGCGCGCAAGAACCTCTCGATCTTCATCGAGGCGGCACGCAAGCGCGGCG
AGGCGCTCGATCACGTGCTGTTCGTAGGCCCCCCCGGCCTCGGCAAGACCACGCTGGCGCAGATCGTCGCCAAGGAGCTC
GGCGTCGGCTTTCGCGCCACCTCGGGTCCGGTGATCGCGAAGGCTGGCGATCTCGCCGCACTCCTCACCAACCTCGAAGA
GCGCGACGTGCTCTTCATCGACGAGATCCATCGCCTGAGCCCGGCGGTGGAAGAGGTGCTCTATCCCGCGATGGAGGACT
TTCAACTCGACCTGATCATCGGCGAGGGCCCGGCGGCACGCTCGGTGAAGATCGAGCTGTCGAAATTCACGCTCGTCGGC
GCCACCACACGCGCTGGCCTGCTCACCAATCCCTTGCGCGATCGCTTCGGCATCCCGGTCCGGCTCAACTTCTATACGAT
CGAAGAGCTGGAAAGCATCGTCACCCGCGGCGCGCGCGTGCTCAATGTCGGTATGAGCGCCGACGGTGCCAACGAGATCG
CGCGCCGCGCCCGTGGCACGCCGCGCATCGCCGGCCGCCTGCTGCGCCGCGTGCGCGATTTCGCCTCCGCCGCCGATGCC
GCCTCGATCGACCGCAAGATCGCCGACCACGCGCTGAGCGCGCTCGAGGTCGACGCCGCCGGCCTCGATGCCATGGACCG
CCGCTACCTCACGACCATCGCGCAGAACTATGGCGGCGGCCCGGTCGGCGTCGAGACGATGGCTGCCGCTTTGTCCGAGC
CGCGCGATGCGATCGAGGACATCATCGAGCCTTATCTCATTCAGTGCGGCTATCTCCAGCGCACCCCGCGCGGCCGCCTG
CTCACCTCGCACGCCTTCCGCCATCTCGGCATCGCCGAGCCCTCGCGCGATGCCGCGGCACAGTTCGGCCTGTTCGGCAC
GGACGAGAGCGACGACTGA

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(24-182)

RuvB C-terminal winged helix domain (WHD_RuvB)

(260-329)

RuvB AAA lid domain (AAA_lid_4)

(185-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

56.024

94.318

0.528
  ruvB Streptococcus pneumoniae TIGR4

53.231

92.33

0.491
  ruvB Streptococcus pneumoniae R6

54.14

89.205

0.483
  ruvB Streptococcus pneumoniae D39

54.14

89.205

0.483
  ruvB Helicobacter pylori 26695

54.662

88.352

0.483
  ruvB Synechocystis sp. PCC 6803

50.152

93.466

0.469

Multiple sequence alignment