Detailed information NTG0362256

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: FDP09_RS04660
• Genome accession: NZ_CP040106
• Coordinates: 1108360..1109736 (-)
• Length: 458 a.a.
• NCBI ID: WP_137401541.1
• Uniprot ID: -
• Organism: Echinicola rosea strain JL3085
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1103360..1114736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDP09_RS04635	-	1103576..1104046 (+)	471	WP_137401536.1	very short patch repair endonuclease	-
FDP09_RS04640	dcm	1104141..1105340 (+)	1200	WP_137401537.1	DNA (cytosine-5-)-methyltransferase	-
FDP09_RS04645	-	1105337..1106638 (+)	1302	WP_137401538.1	MvaI/BcnI family restriction endonuclease	-
FDP09_RS04650	-	1106746..1107402 (+)	657	WP_137401539.1	HAD family phosphatase	-
FDP09_RS04655	-	1107482..1107904 (-)	423	WP_137401540.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
FDP09_RS04660	radA	1108360..1109736 (-)	1377	WP_137401541.1	DNA repair protein RadA	Machinery gene
FDP09_RS04665	polA	1109915..1112731 (-)	2817	WP_137401542.1	DNA polymerase I	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50392.82 Da
• Isoelectric Point: 6.7594

>NTDB_id=362256 FDP09_RS04660 WP_137401541.1 1108360..1109736(-) (radA) [Echinicola rosea strain JL3085]
MPKIKTAYFCQNCGAQSPKWVGKCPACGEWNTFVEEVIHKEENARGSWKQGSEKKKRSNSPRKLQDINYEEHPRLVTKDA
ELDRVLGGGIVTGSLTLIGGEPGIGKSTLMLQIALILNQTSVLYVSGEESESQIKMRADRMQYHSENCFVLSETNTQVIF
QQIETLKPEVLVIDSIQTLHSKHVESAAGSVSQVRECTAELMKFAKETGTPVFLIGHITKDGSIAGPKILEHMVDTVLQF
EGDRHLSYRILRTSKNRFGSTNELGIYEMRAEGLRGVANPSEILLSQREEVLNGVAIGAMLEGNRPLLIEIQSLISPATY
GTPQRSSTGHDAKRLNMLLAVLEKRGGMRLGQQDVFLNVAGGMRVDDPGLDLAVCAALLSSYEDTPVSPDLCFAGEVGLG
GEIRAVNRIENRIAEADKLGFKKIIVSKYAVKGVDLSTFGIQVIPVSKLEEMYQRLFN

Nucleotide

• Length: 1377 bp

>NTDB_id=362256 FDP09_RS04660 WP_137401541.1 1108360..1109736(-) (radA) [Echinicola rosea strain JL3085]
ATGCCAAAAATAAAGACCGCTTACTTCTGCCAAAACTGTGGTGCCCAAAGTCCCAAGTGGGTCGGCAAATGTCCGGCCTG
TGGGGAGTGGAATACTTTTGTAGAAGAGGTTATCCACAAGGAAGAAAATGCCCGCGGAAGCTGGAAACAGGGTTCTGAAA
AAAAGAAACGGAGTAATTCGCCCAGAAAATTACAGGATATCAATTATGAGGAGCACCCTCGTTTGGTTACCAAAGATGCA
GAATTGGACCGTGTTTTGGGAGGTGGGATCGTCACGGGTTCACTGACCCTTATTGGTGGCGAGCCGGGCATTGGCAAGTC
CACCTTGATGCTCCAGATAGCCCTGATCCTGAACCAAACCAGTGTGCTGTATGTCTCTGGCGAGGAAAGTGAGAGCCAGA
TCAAGATGCGTGCTGATCGGATGCAATATCACAGTGAAAACTGTTTTGTGCTTTCTGAAACCAACACACAGGTGATCTTT
CAGCAGATAGAGACGCTGAAGCCAGAAGTATTGGTGATCGATTCCATCCAGACCTTGCACAGCAAGCATGTGGAATCTGC
CGCTGGATCGGTCTCCCAAGTACGAGAGTGTACGGCGGAGCTGATGAAATTTGCCAAGGAAACAGGCACTCCGGTTTTTT
TAATTGGCCATATCACCAAAGACGGCTCCATCGCCGGGCCAAAGATCTTGGAACACATGGTGGATACCGTGTTGCAGTTT
GAAGGTGATCGGCATCTCTCCTATCGGATTTTGCGTACTTCCAAAAACCGTTTTGGCTCTACCAATGAGCTCGGCATCTA
TGAAATGCGCGCAGAAGGCCTCCGAGGTGTGGCCAATCCCTCCGAGATTCTGCTCAGCCAACGGGAGGAAGTGCTCAATG
GCGTGGCCATCGGTGCCATGCTGGAAGGAAATCGCCCGCTGTTGATAGAAATCCAATCGCTGATCAGTCCAGCCACCTAT
GGCACTCCACAGCGAAGCAGCACTGGCCATGATGCCAAGCGGTTAAATATGCTTTTGGCTGTTTTGGAGAAGCGCGGGGG
AATGCGCTTGGGACAGCAGGATGTATTCTTGAATGTGGCCGGCGGTATGCGTGTGGACGATCCAGGCTTGGATTTGGCCG
TGTGTGCGGCATTACTTTCTTCGTACGAAGACACACCGGTATCGCCAGACTTGTGCTTTGCAGGTGAAGTGGGATTGGGC
GGTGAAATCCGCGCCGTAAACCGCATCGAAAACCGCATTGCCGAAGCAGATAAACTCGGTTTCAAGAAGATCATTGTCTC
CAAATATGCTGTCAAGGGAGTGGACTTATCCACATTTGGAATCCAAGTCATCCCCGTTTCCAAACTGGAGGAGATGTACC
AGCGATTGTTCAACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (77-222)

• Subunit ChlI of Mg-chelatase (ChlI) (346-428)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	53.304	99.127	0.528
radA	Streptococcus pneumoniae Rx1	50.98	100	0.511
radA	Streptococcus pneumoniae D39	50.98	100	0.511
radA	Streptococcus pneumoniae R6	50.98	100	0.511
radA	Streptococcus pneumoniae TIGR4	50.98	100	0.511
radA	Streptococcus mitis SK321	50.763	100	0.509
radA	Streptococcus mitis NCTC 12261	50.763	100	0.509