Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FDQ49_RS11915 Genome accession   NZ_CP040105
Coordinates   2512917..2513801 (+) Length   294 a.a.
NCBI ID   WP_006582617.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2507917..2518801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS11890 (FDQ49_11890) - 2508310..2509557 (-) 1248 WP_002050751.1 YihY family inner membrane protein -
  FDQ49_RS11895 (FDQ49_11895) wrbA 2509838..2510440 (+) 603 WP_185126866.1 NAD(P)H:quinone oxidoreductase -
  FDQ49_RS11900 (FDQ49_11900) - 2510494..2511069 (-) 576 WP_002050789.1 xanthine phosphoribosyltransferase -
  FDQ49_RS11905 (FDQ49_11905) - 2511141..2511854 (-) 714 WP_022576135.1 DUF3108 domain-containing protein -
  FDQ49_RS11910 (FDQ49_11910) - 2512012..2512683 (-) 672 WP_022576134.1 hypothetical protein -
  FDQ49_RS11915 (FDQ49_11915) tonB2 2512917..2513801 (+) 885 WP_006582617.1 energy transducer TonB Machinery gene
  FDQ49_RS11920 (FDQ49_11920) ybeY 2513891..2514367 (-) 477 WP_004711856.1 rRNA maturation RNase YbeY -
  FDQ49_RS11925 (FDQ49_11925) - 2514377..2515465 (-) 1089 WP_002050786.1 PhoH family protein -
  FDQ49_RS11930 (FDQ49_11930) miaB 2515503..2516954 (-) 1452 WP_002050781.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33600.44 Da        Isoelectric Point: 9.4514

>NTDB_id=362247 FDQ49_RS11915 WP_006582617.1 2512917..2513801(+) (tonB2) [Acinetobacter nosocomialis M2]
MLKKRSLSIEPFHYWWQDRVFIVAIILAILLHTFVLLIHFAMPAPSEQSTKEIAISVRPTEEIVKHADFLAQADQQGSGT
FRAAHRMSSNSPTPMPTDASTGEAQLDTLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=362247 FDQ49_RS11915 WP_006582617.1 2512917..2513801(+) (tonB2) [Acinetobacter nosocomialis M2]
ATGTTGAAAAAAAGAAGTCTTTCTATAGAGCCTTTTCATTATTGGTGGCAAGACCGAGTCTTTATTGTCGCGATAATACT
CGCAATCTTATTGCATACTTTTGTGCTGCTCATCCATTTTGCGATGCCTGCACCATCAGAACAATCGACTAAAGAAATTG
CGATATCGGTTCGTCCTACAGAAGAGATCGTTAAGCATGCAGACTTTTTAGCTCAAGCAGACCAGCAGGGTTCGGGAACT
TTTCGAGCGGCTCATCGAATGTCCAGTAATTCTCCGACGCCTATGCCGACTGATGCTTCAACTGGCGAAGCTCAGTTAGA
CACTTTGGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTATTAATGACTGTGTTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGGAAAAAAGCACTTGAACAGTTACAGAGCCAATTTCAAGCAAAAGCCGCAATGGTCGCGAGC
CTTGAAGCTCAATATTTGCAACGTCAGCAAGATTTCAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCTTCAGCAGCTTATCTAGATAAATTCCGTGAAAAAGTAGAGCTTTACGGTAACCGCTATTATCCAGAAGAAG
CCAAGCAGCAACAGCTAAAAGGTGAAGTCCGCCTTATGGTGATTTTAAATGCTCAAGGGGGAATTCGTGCAATCCGTTTA
CTTGAAAGTTCAGGACATCCAGTTTTAGATGAGGCAGCAAAGGCATCAGTACGTCGTGGAGCACCGTTTGGTCGTTTTGA
TGCAAATATGAAGGATATTTCCGAGCTACGTATTGTGCGTACTTGGCGTTTTGATCCAGCTGAAGCCGAGTTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

95.578

100

0.956

Multiple sequence alignment