Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   FDQ49_RS07685 Genome accession   NZ_CP040105
Coordinates   1636383..1638611 (+) Length   742 a.a.
NCBI ID   WP_022575830.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis M2     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631383..1643611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS07655 (FDQ49_07655) lnt 1631419..1632978 (+) 1560 WP_022575829.1 apolipoprotein N-acyltransferase -
  FDQ49_RS07660 (FDQ49_07660) - 1632980..1633318 (-) 339 WP_000434938.1 tRNA-binding protein -
  FDQ49_RS07665 (FDQ49_07665) - 1633559..1633819 (+) 261 WP_004710772.1 DUF2798 domain-containing protein -
  FDQ49_RS07670 (FDQ49_07670) - 1633880..1634224 (-) 345 WP_016803955.1 hypothetical protein -
  FDQ49_RS07675 (FDQ49_07675) gspG 1634490..1635005 (-) 516 WP_017398156.1 type II secretion system major pseudopilin GspG -
  FDQ49_RS07680 (FDQ49_07680) gspF 1635029..1636234 (-) 1206 WP_004699003.1 type II secretion system inner membrane protein GspF -
  FDQ49_RS07685 (FDQ49_07685) priA 1636383..1638611 (+) 2229 WP_022575830.1 primosomal protein N' Machinery gene
  FDQ49_RS07690 (FDQ49_07690) - 1638687..1640528 (+) 1842 WP_022575831.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  FDQ49_RS07695 (FDQ49_07695) - 1640694..1641569 (+) 876 WP_004710781.1 Hsp33 family molecular chaperone HslO -
  FDQ49_RS07700 (FDQ49_07700) - 1641706..1642317 (+) 612 WP_022575832.1 LysE family translocator -
  FDQ49_RS07705 (FDQ49_07705) - 1642467..1643429 (+) 963 WP_022575833.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83975.83 Da        Isoelectric Point: 8.5653

>NTDB_id=362221 FDQ49_RS07685 WP_022575830.1 1636383..1638611(+) (priA) [Acinetobacter nosocomialis M2]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKVQYERAQVGSRVAISFGRQNLIAIITEKVDPQESFTGNFQLKAVSELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNVEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVLLGSATPSIDSYHLVETGKLTALQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGDIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAQRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=362221 FDQ49_RS07685 WP_022575830.1 1636383..1638611(+) (priA) [Acinetobacter nosocomialis M2]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGTACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGCTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTAACTTTCAGCTTAAAGCCGTTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTTCCGATTGGTGA
GGTGATGCAAACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTGTTATTTCATTTATGGAAAATCATTC
CATGTGACAATGTTGAAGCTCTGCTAAAACGCTCAATCAAACAACAAGACGCTTATCAAATTTTAAAATTACACCCTGCC
GGAACTACAGAAAATATTCTTAATTTGAGTGGTGTAGAAACTGCGACACTTAAAGCACTGCAAAAGAAAGGACTGGTAGA
CTGTACGCTTGAGCCACATGACTTTAGCCCAGCACCCGTACAATTGGCTCAAATGCCACTCACGCTTAATGAAGACCAAA
AGAAAGCAACTCAGCACGTCCTTAATGCACAGCATCAATATCAAGCGTTTTTGTTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCATGAAGTGCTAAAGCAAGGTAAGCAAGTATTAGTGTTAGTTCCTGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATTGCTTTATTACATTCGGGCTTAAATGACTCGA
AGCGCTTACAAGCATGGCAACAGGCACAGACTGGAAAAGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTGGGCCTTATCATTTTAGATGAAGAGCACGATCTGTCTTATAAACAACAAGAAGGCTTTCGTTACCATGC
GCGTGATGTCGCGCTTTACCGCGGACATTTACAAGGCTGTCCTGTTCTTTTAGGTTCAGCAACCCCAAGCATTGATAGCT
ATCACTTAGTCGAAACTGGCAAGTTAACTGCACTTCAGCTGAACCAACGTGCAGGCCATGCGCTTTTACCAAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAACAGCATGGAATTAGCCAGCCTTTAATCGAGCAAATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATTTTTTTAAACCGACGTGGTTATGCACCTGTTCTGGTCTGTGAAAGTTGTGGTTGGCAAGCGA
ATTGTCCGCATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACATTGTCACCACTGCGGCACGGTT
CATCGCTTGCCAGACCACTGCCCTGAATGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCTGGCACAGCCAAGGTTGAAGA
GCATTTACAAGAATTATTTCCAGATCATGATGTGATTCGGGTCGATCGTGACAGCACCAGCCGAGTCGGTAGCTGGCAAA
AAATTTATGATCGCATTCAGCAAAATAAACCTTCGATTTTGCTTGGTACGCAAATGTTGGCAAAAGGTCACCATTTTCCG
CATGTGACCTTGGTTGCTATTTTAGATATTGATGCAGGTTTATTGAGTGTCGATATACGAGCGCCAGAGCGTACTGCTCA
ATTGATTGTACAAGTGGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAGACTTTAAGGCCAGATC
ACCCTTTATTGACCACGCTTATTGAAAAAGATTATCGGGCAGTCGCAAAGCAAACATTGGCTGAACGTAAAGTTGCATTA
CTGCCGCCTTATCGCTATGCCGTACTAATACGCGCTGAATCGAAAGATCGCGATTATACCTTGCATTTTTTAAATGAAGC
TGCCGAGCAACTTCGTCAAATTGCAGGTGATATTGTTGATATCTGGGGGCCAATTCCCGCGCCAATGGAACGTAAAGCGG
GACGTTACCGCGCCCATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAG
TTGGTCCATGCGCAAAGACAGCATCAACTCAGACTCTCTATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(208-369)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977

Multiple sequence alignment