Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FDV79_RS20790 Genome accession   NZ_CP040104
Coordinates   1119031..1120212 (+) Length   393 a.a.
NCBI ID   WP_140379352.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114031..1125212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS20775 (FDV79_22285) - 1114309..1116525 (+) 2217 WP_178979080.1 M9 family metallopeptidase -
  FDV79_RS20780 (FDV79_22290) - 1116705..1117442 (+) 738 WP_025592900.1 EAL domain-containing protein -
  FDV79_RS20785 (FDV79_22295) ylqF 1117732..1118676 (+) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  FDV79_RS20790 (FDV79_22300) cqsA 1119031..1120212 (+) 1182 WP_140379352.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FDV79_RS20795 (FDV79_22305) cqsS 1120290..1122338 (-) 2049 WP_021450907.1 response regulator Regulator
  FDV79_RS20800 (FDV79_22310) - 1122658..1123275 (+) 618 WP_140379351.1 HAD family phosphatase -
  FDV79_RS20805 (FDV79_22315) - 1123362..1123910 (-) 549 WP_015313129.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43782.14 Da        Isoelectric Point: 6.6121

>NTDB_id=362207 FDV79_RS20790 WP_140379352.1 1119031..1120212(+) (cqsA) [Vibrio parahaemolyticus strain LVP66]
MCTKNETKPLPSFIEERLTFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHQDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMKSCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=362207 FDV79_RS20790 WP_140379352.1 1119031..1120212(+) (cqsA) [Vibrio parahaemolyticus strain LVP66]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTACTTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAGAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCAAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCCGCCTTTGAGCACCAGCTAGCGACGTTTGTCGGCATGAAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGCGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTGACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCTAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578

Multiple sequence alignment