Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   FDV79_RS18400 Genome accession   NZ_CP040104
Coordinates   569455..570552 (+) Length   365 a.a.
NCBI ID   WP_178979016.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 564455..575552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS18370 (FDV79_19685) - 564592..565569 (+) 978 WP_140379584.1 Gfo/Idh/MocA family protein -
  FDV79_RS18375 (FDV79_19690) - 565643..566980 (-) 1338 WP_178979075.1 MATE family efflux transporter -
  FDV79_RS18380 (FDV79_19695) - 567103..567417 (-) 315 WP_005453573.1 DUF496 family protein -
  FDV79_RS18385 (FDV79_19705) - 567745..567960 (+) 216 WP_005477197.1 hypothetical protein -
  FDV79_RS18390 (FDV79_19710) - 568137..568787 (+) 651 WP_005499314.1 YceH family protein -
  FDV79_RS18395 (FDV79_19715) - 568784..569104 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  FDV79_RS18400 (FDV79_19720) luxP 569455..570552 (+) 1098 WP_178979016.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  FDV79_RS18405 (FDV79_19725) luxQ 570552..573128 (+) 2577 WP_005477121.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  FDV79_RS18410 (FDV79_19730) - 573340..573795 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  FDV79_RS18415 (FDV79_19735) - 573834..574889 (+) 1056 WP_140375675.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41329.63 Da        Isoelectric Point: 5.0568

>NTDB_id=362205 FDV79_RS18400 WP_178979016.1 569455..570552(+) (luxP) [Vibrio parahaemolyticus strain LVP66]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQSFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=362205 FDV79_RS18400 WP_178979016.1 569455..570552(+) (luxP) [Vibrio parahaemolyticus strain LVP66]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCTGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAGATCAATCAAGTGTTTAC
GCGACCAAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTGAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGACACGACCCGACATCGTAAGTTTGTCGAACACGTTTTAGATTCCACCAAAACCAAACTTATCCTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGTCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGTGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTGTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGACATCACCGTCATGCGTATGAATGATGATACTGGCATTGCGATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
CTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGACAATTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.286

99.726

0.641

Multiple sequence alignment