Detailed information NTG0362192

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FDV79_RS14220
• Genome accession: NZ_CP040103
• Coordinates: 2987482..2988471 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain LVP66
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2982482..2993471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDV79_RS14205 (FDV79_15220)	recA	2983031..2984074 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
FDV79_RS14210 (FDV79_15225)	pncC	2984274..2984756 (-)	483	WP_140104007.1	nicotinamide-nucleotide amidase	-
FDV79_RS14215 (FDV79_15230)	mutS	2984841..2987402 (+)	2562	WP_062866927.1	DNA mismatch repair protein MutS	-
FDV79_RS14220 (FDV79_15235)	rpoS	2987482..2988471 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FDV79_RS14225 (FDV79_15240)	-	2988552..2989475 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FDV79_RS14230 (FDV79_15245)	-	2989490..2990116 (-)	627	WP_029816278.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FDV79_RS14235 (FDV79_15250)	surE	2990116..2990892 (-)	777	WP_042762073.1	5'/3'-nucleotidase SurE	-
FDV79_RS14240 (FDV79_15255)	truD	2990892..2991935 (-)	1044	WP_140381122.1	tRNA pseudouridine(13) synthase TruD	-
FDV79_RS14245 (FDV79_15260)	ispF	2991982..2992458 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FDV79_RS14250 (FDV79_15265)	ispD	2992476..2993180 (-)	705	WP_005487195.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FDV79_RS14255 (FDV79_15270)	ftsB	2993182..2993463 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=362192 FDV79_RS14220 WP_005478537.1 2987482..2988471(-) (rpoS) [Vibrio parahaemolyticus strain LVP66]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=362192 FDV79_RS14220 WP_005478537.1 2987482..2988471(-) (rpoS) [Vibrio parahaemolyticus strain LVP66]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGTCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCACTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851