Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FDV79_RS14090 Genome accession   NZ_CP040103
Coordinates   2965367..2965885 (-) Length   172 a.a.
NCBI ID   WP_029816118.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP66     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2960367..2970885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV79_RS14065 (FDV79_15080) rimM 2960476..2961024 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  FDV79_RS14070 (FDV79_15085) rpsP 2961053..2961301 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  FDV79_RS14075 (FDV79_15090) ffh 2961511..2962893 (-) 1383 WP_005462555.1 signal recognition particle protein -
  FDV79_RS14080 (FDV79_15095) - 2963106..2963900 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  FDV79_RS14085 (FDV79_15100) - 2964026..2965306 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  FDV79_RS14090 (FDV79_15105) luxS 2965367..2965885 (-) 519 WP_029816118.1 S-ribosylhomocysteine lyase Regulator
  FDV79_RS14095 (FDV79_15110) - 2965952..2966557 (-) 606 WP_178978958.1 hypothetical protein -
  FDV79_RS14100 (FDV79_15115) gshA 2966582..2968150 (-) 1569 WP_140380221.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19061.79 Da        Isoelectric Point: 4.7134

>NTDB_id=362189 FDV79_RS14090 WP_029816118.1 2965367..2965885(-) (luxS) [Vibrio parahaemolyticus strain LVP66]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLVSMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=362189 FDV79_RS14090 WP_029816118.1 2965367..2965885(-) (luxS) [Vibrio parahaemolyticus strain LVP66]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGTTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.304

99.419

0.878

Multiple sequence alignment