Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FDV78_RS17265 Genome accession   NZ_CP040102
Coordinates   11751..12932 (+) Length   393 a.a.
NCBI ID   WP_140378488.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6751..17932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDV78_RS17255 (FDV78_18400) - 8911..9765 (+) 855 WP_140300109.1 LysR family transcriptional regulator -
  FDV78_RS17260 (FDV78_18405) ylqF 10452..11396 (+) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  FDV78_RS17265 (FDV78_18410) cqsA 11751..12932 (+) 1182 WP_140378488.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FDV78_RS17270 (FDV78_18415) cqsS 13010..15058 (-) 2049 WP_025588878.1 response regulator Regulator
  FDV78_RS17275 (FDV78_18420) - 15378..15995 (+) 618 WP_025533320.1 HAD family phosphatase -
  FDV78_RS17280 (FDV78_18425) - 16082..16630 (-) 549 WP_005481267.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43875.23 Da        Isoelectric Point: 6.6599

>NTDB_id=362159 FDV78_RS17265 WP_140378488.1 11751..12932(+) (cqsA) [Vibrio parahaemolyticus strain LVP2]
MCTKNETRPLPSFIEERLNFHIHDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=362159 FDV78_RS17265 WP_140378488.1 11751..12932(+) (cqsA) [Vibrio parahaemolyticus strain LVP2]
ATGTGTACTAAAAACGAAACTAGACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCATGATTTAATTAA
ATCTAACGAAAATCAAAAACACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCCGTGGTAATGCAAAGCAATGATTACC
TTTCCCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAACTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCGGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCTTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.747

97.455

0.573

Multiple sequence alignment