Detailed information NTG0362156

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FDV78_RS16430
• Genome accession: NZ_CP040101
• Coordinates: 3433176..3434183 (+)
• Length: 335 a.a.
• NCBI ID: WP_029837294.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain LVP2
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3428176..3439183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDV78_RS16410 (FDV78_17530)	rplC	3428710..3429339 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
FDV78_RS16415 (FDV78_17535)	rpsJ	3429354..3429665 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
FDV78_RS16420 (FDV78_17540)	rpmE	3430123..3430344 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
FDV78_RS16425 (FDV78_17550)	priA	3430639..3432843 (+)	2205	WP_140316677.1	primosomal protein N'	-
FDV78_RS16430 (FDV78_17555)	cytR	3433176..3434183 (+)	1008	WP_029837294.1	DNA-binding transcriptional regulator CytR	Regulator
FDV78_RS16435 (FDV78_17560)	ftsN	3434359..3434904 (+)	546	WP_029830950.1	cell division protein FtsN	-
FDV78_RS16440 (FDV78_17565)	hslV	3435069..3435620 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
FDV78_RS16445 (FDV78_17570)	hslU	3435644..3436975 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
FDV78_RS16450 (FDV78_17575)	-	3437389..3437613 (-)	225	WP_023624902.1	hypothetical protein	-
FDV78_RS16455 (FDV78_17580)	-	3437774..3437923 (-)	150	WP_023624903.1	AlpA family phage regulatory protein	-
FDV78_RS16460 (FDV78_17585)	radC	3438094..3438567 (+)	474	WP_140316676.1	DNA repair protein RadC	-
FDV78_RS16465 (FDV78_17590)	-	3438564..3438995 (+)	432	WP_140316675.1	DUF2787 domain-containing protein	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36821.33 Da
• Isoelectric Point: 6.4935

>NTDB_id=362156 FDV78_RS16430 WP_029837294.1 3433176..3434183(+) (cytR) [Vibrio parahaemolyticus strain LVP2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPDPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=362156 FDV78_RS16430 WP_029837294.1 3433176..3434183(+) (cytR) [Vibrio parahaemolyticus strain LVP2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGATCCACCAACTGCG
ATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCCTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCACAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	99.701	100	0.997
cytR	Vibrio cholerae C6706	90.419	99.701	0.901