Detailed information NTG0362135

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FDV78_RS03480
• Genome accession: NZ_CP040101
• Coordinates: 720457..721446 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain LVP2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 715457..726446

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDV78_RS03445 (FDV78_03755)	ftsB	715465..715746 (+)	282	WP_005455577.1	cell division protein FtsB	-
FDV78_RS03450 (FDV78_03760)	ispD	715748..716452 (+)	705	WP_179000435.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FDV78_RS03455 (FDV78_03765)	ispF	716470..716946 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FDV78_RS03460 (FDV78_03770)	truD	716993..718036 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
FDV78_RS03465 (FDV78_03775)	surE	718036..718812 (+)	777	WP_005478553.1	5'/3'-nucleotidase SurE	-
FDV78_RS03470 (FDV78_03780)	-	718812..719438 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FDV78_RS03475 (FDV78_03785)	-	719453..720376 (+)	924	WP_075110810.1	peptidoglycan DD-metalloendopeptidase family protein	-
FDV78_RS03480 (FDV78_03790)	rpoS	720457..721446 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FDV78_RS03485 (FDV78_03795)	mutS	721526..724111 (-)	2586	WP_140210768.1	DNA mismatch repair protein MutS	-
FDV78_RS03490 (FDV78_03800)	-	724284..725624 (+)	1341	WP_053340161.1	site-specific integrase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=362135 FDV78_RS03480 WP_005478537.1 720457..721446(+) (rpoS) [Vibrio parahaemolyticus strain LVP2]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=362135 FDV78_RS03480 WP_005478537.1 720457..721446(+) (rpoS) [Vibrio parahaemolyticus strain LVP2]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGTAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGAGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGCTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACTCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCTCGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851