Detailed information NTG0362111

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: FDP11_RS23090
• Genome accession: NZ_CP040100
• Coordinates: 3064650..3065657 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: A0A072GUT1
• Organism: Vibrio parahaemolyticus strain LVP1
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3059650..3070657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDP11_RS23070 (FDP11_24765)	rplC	3060167..3060796 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
FDP11_RS23075 (FDP11_24770)	rpsJ	3060811..3061122 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
FDP11_RS23080 (FDP11_24775)	rpmE	3061597..3061818 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
FDP11_RS23085 (FDP11_24785)	priA	3062113..3064317 (+)	2205	WP_178982894.1	primosomal protein N'	-
FDP11_RS23090 (FDP11_24790)	cytR	3064650..3065657 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
FDP11_RS23095 (FDP11_24795)	ftsN	3065834..3066379 (+)	546	WP_005481405.1	cell division protein FtsN	-
FDP11_RS23100 (FDP11_24800)	hslV	3066544..3067095 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
FDP11_RS23105 (FDP11_24805)	hslU	3067119..3068450 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
FDP11_RS23110 (FDP11_24810)	-	3068635..3069552 (+)	918	WP_017449001.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
FDP11_RS23115 (FDP11_24815)	rraA	3069629..3070141 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
FDP11_RS23120 (FDP11_24820)	zapB	3070246..3070488 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=362111 FDP11_RS23090 WP_005481416.1 3064650..3065657(+) (cytR) [Vibrio parahaemolyticus strain LVP1]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=362111 FDP11_RS23090 WP_005481416.1 3064650..3065657(+) (cytR) [Vibrio parahaemolyticus strain LVP1]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCAGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGTACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTACGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GTGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATTT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A072GUT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904