Detailed information NTG0362089

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FDP11_RS10480
• Genome accession: NZ_CP040100
• Coordinates: 494637..495626 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain LVP1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 489637..500626

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FDP11_RS10445 (FDP11_11240)	ftsB	489645..489926 (+)	282	WP_005455577.1	cell division protein FtsB	-
FDP11_RS10450 (FDP11_11245)	ispD	489928..490632 (+)	705	WP_178981798.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FDP11_RS10455 (FDP11_11250)	ispF	490650..491126 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FDP11_RS10460 (FDP11_11255)	truD	491173..492216 (+)	1044	WP_020835387.1	tRNA pseudouridine(13) synthase TruD	-
FDP11_RS10465 (FDP11_11260)	surE	492216..492992 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
FDP11_RS10470 (FDP11_11265)	-	492992..493618 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FDP11_RS10475 (FDP11_11270)	-	493633..494556 (+)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
FDP11_RS10480 (FDP11_11275)	rpoS	494637..495626 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
FDP11_RS10485 (FDP11_11280)	mutS	495705..498266 (-)	2562	WP_005478546.1	DNA mismatch repair protein MutS	-
FDP11_RS10490 (FDP11_11285)	pncC	498351..498833 (+)	483	WP_029816369.1	nicotinamide-nucleotide amidase	-
FDP11_RS10495 (FDP11_11290)	recA	499034..500077 (+)	1044	WP_005478550.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=362089 FDP11_RS10480 WP_005478537.1 494637..495626(+) (rpoS) [Vibrio parahaemolyticus strain LVP1]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=362089 FDP11_RS10480 WP_005478537.1 494637..495626(+) (rpoS) [Vibrio parahaemolyticus strain LVP1]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851