Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   FDP11_RS01785 Genome accession   NZ_CP040099
Coordinates   398990..400171 (-) Length   393 a.a.
NCBI ID   WP_025791219.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 393990..405171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP11_RS01770 (FDP11_01875) - 394939..395979 (-) 1041 WP_178980979.1 IS481 family transposase -
  FDP11_RS01775 (FDP11_01880) - 396242..396544 (-) 303 Protein_354 HAD family phosphatase -
  FDP11_RS01780 (FDP11_01885) cqsS 396864..398912 (+) 2049 WP_021450907.1 response regulator Regulator
  FDP11_RS01785 (FDP11_01890) cqsA 398990..400171 (-) 1182 WP_025791219.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  FDP11_RS01790 (FDP11_01895) ylqF 400526..401470 (-) 945 WP_017448150.1 ribosome biogenesis GTPase YlqF -
  FDP11_RS01795 (FDP11_01905) - 402213..403067 (-) 855 WP_029800958.1 LysR family transcriptional regulator -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43840.14 Da        Isoelectric Point: 6.4984

>NTDB_id=362074 FDP11_RS01785 WP_025791219.1 398990..400171(-) (cqsA) [Vibrio parahaemolyticus strain LVP1]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTISPLRAIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELAIGLKRIGFNIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=362074 FDP11_RS01785 WP_025791219.1 398990..400171(-) (cqsA) [Vibrio parahaemolyticus strain LVP1]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCA
GCAATCTTCTTGCAAGATGATCAATCAAAACCGGCCTTTGAGCACCAGCTGGCGACGTTTGTCGGTATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTATTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCAGTGTATAGCACGATTGGCACAATCTC
CCCGTTACGTGCCATCTACGAAATGGCGAAGGAGTTCGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTGGGCACAC
ACGGACCAAAGGGTTCTGGATTATTACAAGAACTGGGACTAACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCGAAA
ACGTTCGCCTACCGCGCTGGTGCGATATTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCGCGATCGGATTAAAACGTATTGGGTTTAACATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGTGAGAGAAACACTGAACGAGTACGAGACTTTCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGCCGACCTGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.398

98.473

0.575

Multiple sequence alignment