Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FDQ92_RS10205 Genome accession   NZ_CP040098
Coordinates   2249299..2250681 (+) Length   460 a.a.
NCBI ID   WP_137424719.1    Uniprot ID   A0A4V1ERQ9
Organism   Desulfoglaeba alkanexedens ALDC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2244299..2255681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ92_RS10185 (FDQ92_10185) - 2245810..2246010 (-) 201 WP_137424711.1 hypothetical protein -
  FDQ92_RS10190 (FDQ92_10190) bamD 2246909..2247679 (-) 771 WP_137424713.1 outer membrane protein assembly factor BamD -
  FDQ92_RS10195 (FDQ92_10195) trxB 2247738..2248679 (-) 942 WP_137424715.1 thioredoxin-disulfide reductase -
  FDQ92_RS10200 (FDQ92_10200) trxA 2248759..2249091 (-) 333 WP_137424717.1 thioredoxin -
  FDQ92_RS10205 (FDQ92_10205) radA 2249299..2250681 (+) 1383 WP_137424719.1 DNA repair protein RadA Machinery gene
  FDQ92_RS10210 (FDQ92_10210) mtnA 2250659..2251708 (-) 1050 WP_137424721.1 S-methyl-5-thioribose-1-phosphate isomerase -
  FDQ92_RS10215 (FDQ92_10215) gatB 2251739..2253163 (-) 1425 WP_137424723.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  FDQ92_RS10220 (FDQ92_10220) sucC 2253445..2254608 (+) 1164 WP_137424725.1 ADP-forming succinate--CoA ligase subunit beta -
  FDQ92_RS10225 (FDQ92_10225) sucD 2254621..2255487 (+) 867 WP_137424727.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49563.51 Da        Isoelectric Point: 7.1775

>NTDB_id=362069 FDQ92_RS10205 WP_137424719.1 2249299..2250681(+) (radA) [Desulfoglaeba alkanexedens ALDC]
MAKGVIFRCRECGHVSPKWMGRCPDCQTWNSLEPQAVSKTLRGAAGGSSGAARRPTLLADVPQADEPRLLSGVGEWDRVL
GGGLVAGSLVLLAGDPGIGKSTLLLQVLGRMAERVPVLYVSGEESLQQLRLRWDRLQLPAGRLHAFAETTLDAVEEALGA
DPPVVLAVDSIQTMQWDAVESAPGSVAQVRECAGRLMRLAKERRIGVFIVGHVTKEGVIAGPRMLEHLVDTVLYLEGDRS
HAFRLLRAVKNRFGATNEIGVFEMKETGLQEVADPSRFLLAERPIDVSGSVVACTMEGSRPLLVELQALVTPTGWMQPRR
TSIGVDVNRLSLLLAVLEKKLGLNFSQQDVFVNVAGGVRLMEPAADLPIIAALMSSVLDRPLPPDLVAWGEVGLAGEVRA
VGHGDARVVEAVKLGFLRHLIPAGNAERLPPGRHIDPLPVRSLREVHERLFSAVTLPVPS

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=362069 FDQ92_RS10205 WP_137424719.1 2249299..2250681(+) (radA) [Desulfoglaeba alkanexedens ALDC]
ATGGCAAAAGGTGTGATCTTCCGCTGCCGTGAATGCGGGCACGTGAGTCCGAAATGGATGGGGCGCTGTCCCGATTGCCA
GACCTGGAATTCCCTGGAACCTCAGGCGGTTTCCAAGACGTTGAGGGGTGCGGCGGGCGGATCCAGCGGCGCCGCCCGAA
GGCCGACGCTCCTTGCGGATGTGCCTCAGGCCGACGAACCCCGGTTGCTCTCCGGGGTCGGCGAATGGGACCGGGTGCTG
GGTGGAGGGCTGGTCGCCGGATCCCTGGTGCTGCTCGCAGGGGATCCCGGCATCGGGAAATCCACCCTGCTGCTCCAGGT
GCTCGGACGCATGGCGGAACGGGTTCCGGTGCTCTACGTTTCCGGCGAAGAAAGCCTCCAGCAGTTGCGGCTGCGTTGGG
ACCGCCTCCAACTTCCCGCCGGAAGGCTTCATGCCTTCGCCGAAACGACCCTGGACGCGGTGGAAGAGGCCCTGGGAGCC
GATCCGCCCGTGGTCCTCGCGGTGGATTCCATTCAGACGATGCAATGGGACGCTGTGGAAAGCGCCCCCGGTTCGGTCGC
CCAGGTCCGCGAATGTGCAGGGCGGCTCATGCGCCTTGCTAAGGAACGCCGGATCGGCGTCTTCATCGTCGGTCACGTCA
CGAAGGAAGGAGTCATCGCGGGTCCCCGGATGCTGGAGCACCTGGTGGACACCGTGCTCTACCTCGAAGGCGACCGCAGC
CATGCCTTCCGGCTGCTGCGCGCCGTGAAGAACCGCTTCGGGGCGACCAACGAAATCGGAGTGTTCGAAATGAAGGAAAC
CGGGCTGCAGGAGGTGGCGGATCCGTCGCGCTTTCTTCTTGCGGAGCGACCGATCGACGTTTCCGGATCCGTAGTGGCCT
GCACCATGGAAGGATCGCGGCCCCTTCTCGTGGAACTGCAGGCCCTGGTCACGCCCACCGGCTGGATGCAGCCCCGGCGG
ACCAGCATAGGCGTGGATGTAAACCGGCTGTCGCTCCTCTTGGCCGTCCTGGAAAAGAAGCTGGGGCTGAACTTTTCTCA
GCAGGACGTGTTTGTCAACGTGGCCGGCGGCGTCCGACTCATGGAACCGGCGGCGGACCTTCCCATTATCGCGGCGCTCA
TGAGCAGCGTTCTGGACCGCCCGCTTCCCCCCGACCTGGTGGCCTGGGGCGAAGTGGGGCTTGCCGGTGAAGTCCGGGCC
GTGGGCCACGGAGACGCCCGCGTCGTCGAAGCCGTGAAACTGGGCTTCCTTCGGCACCTCATTCCCGCAGGAAACGCTGA
ACGCCTGCCGCCCGGCCGGCACATCGACCCGCTCCCGGTCCGATCGCTCCGTGAAGTCCACGAGCGGCTTTTTTCGGCCG
TTACGCTTCCAGTGCCTTCTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(344-429)

AAA domain (AAA_25)

(80-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1ERQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.016

96.304

0.491
  radA Streptococcus mitis NCTC 12261

48

97.826

0.47
  radA Streptococcus mitis SK321

48

97.826

0.47
  radA Streptococcus pneumoniae Rx1

47.778

97.826

0.467
  radA Streptococcus pneumoniae D39

47.778

97.826

0.467
  radA Streptococcus pneumoniae R6

47.778

97.826

0.467
  radA Streptococcus pneumoniae TIGR4

47.778

97.826

0.467

Multiple sequence alignment