Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FDN13_RS08910 Genome accession   NZ_CP040093
Coordinates   1814279..1815634 (+) Length   451 a.a.
NCBI ID   WP_138979871.1    Uniprot ID   A0A5B7THI7
Organism   Caloramator sp. E03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1809279..1820634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDN13_RS08890 (FDN13_08890) - 1809698..1810156 (+) 459 WP_138979867.1 CtsR family transcriptional regulator -
  FDN13_RS08895 (FDN13_08895) - 1810171..1810707 (+) 537 WP_138979868.1 UvrB/UvrC motif-containing protein -
  FDN13_RS08900 (FDN13_08900) - 1810712..1811734 (+) 1023 WP_138979869.1 protein arginine kinase -
  FDN13_RS08905 (FDN13_08905) - 1811747..1814170 (+) 2424 WP_138979870.1 ATP-dependent Clp protease ATP-binding subunit -
  FDN13_RS08910 (FDN13_08910) radA 1814279..1815634 (+) 1356 WP_138979871.1 DNA repair protein RadA Machinery gene
  FDN13_RS08915 (FDN13_08915) disA 1815637..1816698 (+) 1062 WP_138979872.1 DNA integrity scanning diadenylate cyclase DisA -
  FDN13_RS08920 (FDN13_08920) - 1816721..1817116 (-) 396 WP_138979873.1 DUF1573 domain-containing protein -
  FDN13_RS08925 (FDN13_08925) - 1817400..1817894 (+) 495 WP_138979874.1 CarD family transcriptional regulator -
  FDN13_RS08930 (FDN13_08930) - 1818036..1819175 (+) 1140 WP_138979875.1 PIN/TRAM domain-containing protein -
  FDN13_RS08935 (FDN13_08935) ispD 1819239..1819928 (+) 690 WP_138979876.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  FDN13_RS08940 (FDN13_08940) ispF 1819939..1820412 (+) 474 WP_138979877.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49425.64 Da        Isoelectric Point: 7.7479

>NTDB_id=362022 FDN13_RS08910 WP_138979871.1 1814279..1815634(+) (radA) [Caloramator sp. E03]
MGKIKTNFVCQECGYESLKWMGKCPGCGSWNTMVEELQQKDVTSPIVTISKPLTINEIEIVEEERYTTYLEELDRVLGGG
IVKGSLILVGGDPGIGKSTLLLQVASNISSKGKIVLYVSGEESARQIKLRAKRIDIKEDRLYILSETNLASIEKYIIEIK
PHVVIIDSIQTIYRAELQSAPGSVSQVREATSVLMRIAKTLNISIFIVGHVTKEGSIAGPRVLEHMVDTVLYFEGNRYHT
YRILRAVKNRFGSTNEIGVFEMREKGLVEIKNPSELLLSGRPSNVSGSCVVCSMEGTRPVLVEIQALTCATSFGMPRRMA
TGVDYNRVILLMAVLEKRVGMQVQTFDAYVNVAGGLKLDEPACDLGIICSIASSFRNIPIDTKTIVIGEVGLTGEIRGVS
LIEKRILEAKKLGFSRCVIPKENVRGIDIPNGISIIPASNIYEALEALLGG

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=362022 FDN13_RS08910 WP_138979871.1 1814279..1815634(+) (radA) [Caloramator sp. E03]
ATGGGTAAAATAAAAACAAACTTTGTATGCCAAGAATGTGGCTATGAGTCTTTGAAATGGATGGGAAAGTGTCCGGGATG
TGGGAGCTGGAATACGATGGTTGAGGAATTACAACAAAAGGATGTAACAAGTCCAATAGTAACTATCTCAAAACCTTTAA
CTATAAATGAAATAGAGATTGTTGAAGAGGAAAGATACACAACATACCTTGAAGAACTTGATAGGGTTCTTGGAGGCGGA
ATTGTAAAGGGTTCCCTTATATTAGTTGGAGGAGATCCTGGGATTGGAAAATCAACTTTGCTTTTACAGGTTGCATCTAA
TATATCATCAAAAGGAAAGATTGTGCTTTACGTTTCAGGAGAAGAATCGGCAAGGCAAATAAAGTTAAGGGCAAAAAGGA
TAGATATTAAAGAAGATAGGCTTTATATTCTTTCTGAAACAAATCTTGCTTCCATTGAAAAGTATATAATTGAGATTAAG
CCTCATGTAGTTATTATAGATTCGATACAGACTATATATAGGGCTGAACTACAATCGGCTCCAGGCAGTGTAAGCCAAGT
CAGGGAAGCAACTTCAGTTCTTATGAGGATAGCAAAGACTTTAAATATATCTATCTTTATAGTAGGGCATGTTACAAAAG
AAGGATCTATTGCAGGGCCAAGGGTGCTTGAGCATATGGTTGATACAGTTTTGTATTTTGAAGGCAATAGATATCATACC
TATAGAATTTTAAGAGCAGTTAAGAATAGATTTGGTTCTACTAATGAGATAGGAGTTTTTGAAATGAGGGAGAAGGGACT
TGTGGAAATAAAAAATCCTTCAGAGCTCTTGCTATCGGGAAGGCCAAGTAATGTCTCAGGGTCTTGTGTTGTGTGCAGTA
TGGAAGGAACAAGGCCTGTGCTTGTTGAAATTCAGGCATTAACCTGTGCAACGAGTTTTGGAATGCCAAGGCGCATGGCA
ACAGGAGTTGATTATAATAGGGTAATACTTTTAATGGCAGTTCTTGAAAAAAGAGTTGGGATGCAAGTTCAAACCTTTGA
TGCTTATGTAAATGTAGCAGGAGGGTTAAAACTTGACGAACCGGCTTGTGATCTTGGGATAATTTGTTCAATAGCATCAA
GCTTTAGAAATATTCCAATTGATACGAAAACTATAGTAATAGGAGAGGTAGGATTAACTGGAGAGATAAGAGGGGTAAGC
CTGATTGAAAAAAGGATATTAGAAGCAAAAAAGCTTGGATTTTCAAGGTGTGTAATCCCTAAGGAAAACGTTAGGGGTAT
TGATATACCTAATGGAATTAGTATAATACCAGCTAGCAATATATATGAAGCTTTAGAGGCTTTATTAGGGGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(339-423)

AAA domain (AAA_25)

(63-215)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7THI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.445

100

0.634
  radA Streptococcus pneumoniae Rx1

55.066

100

0.554
  radA Streptococcus pneumoniae D39

55.066

100

0.554
  radA Streptococcus pneumoniae R6

55.066

100

0.554
  radA Streptococcus pneumoniae TIGR4

55.066

100

0.554
  radA Streptococcus mitis NCTC 12261

55.066

100

0.554
  radA Streptococcus mitis SK321

55.066

100

0.554

Multiple sequence alignment