Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FDM99_RS00310 Genome accession   NZ_CP040080
Coordinates   58926..59810 (-) Length   294 a.a.
NCBI ID   WP_032027125.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain SP304     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53926..64810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDM99_RS00295 (FDM99_00295) miaB 55773..57224 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FDM99_RS00300 (FDM99_00300) - 57262..58350 (+) 1089 WP_000122983.1 PhoH family protein -
  FDM99_RS00305 (FDM99_00305) ybeY 58360..58836 (+) 477 WP_000703571.1 rRNA maturation RNase YbeY -
  FDM99_RS00310 (FDM99_00310) tonB2 58926..59810 (-) 885 WP_032027125.1 energy transducer TonB Machinery gene
  FDM99_RS00315 (FDM99_00315) - 60041..60712 (+) 672 WP_032027126.1 hypothetical protein -
  FDM99_RS00320 (FDM99_00320) - 60870..61583 (+) 714 WP_032027127.1 DUF3108 domain-containing protein -
  FDM99_RS00325 (FDM99_00325) - 61656..62231 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  FDM99_RS00330 (FDM99_00330) wrbA 62284..62877 (-) 594 WP_032027128.1 NAD(P)H:quinone oxidoreductase -
  FDM99_RS00335 (FDM99_00335) - 63165..64412 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33648.57 Da        Isoelectric Point: 9.0935

>NTDB_id=361900 FDM99_RS00310 WP_032027125.1 58926..59810(-) (tonB2) [Acinetobacter baumannii strain SP304]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEEIQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=361900 FDM99_RS00310 WP_032027125.1 58926..59810(-) (tonB2) [Acinetobacter baumannii strain SP304]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGATCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGCCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTA
CTTGAAAGCTCAGGCCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATCATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment