Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GALLO_RS03655 Genome accession   NC_013798
Coordinates   693653..695455 (+) Length   600 a.a.
NCBI ID   WP_012961672.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 688653..700455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS03630 (GALLO_0664) queA 689309..690337 (-) 1029 WP_009853772.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GALLO_RS03635 (GALLO_0665) - 690513..691013 (+) 501 WP_012961668.1 VIT1/CCC1 transporter family protein -
  GALLO_RS03640 (GALLO_0666) nagB 691141..691845 (+) 705 WP_012961669.1 glucosamine-6-phosphate deaminase -
  GALLO_RS03645 (GALLO_0667) - 691921..692637 (+) 717 WP_012961670.1 pseudouridine synthase -
  GALLO_RS03650 (GALLO_0668) - 692692..693663 (+) 972 WP_012961671.1 competence protein CoiA -
  GALLO_RS03655 (GALLO_0669) pepF 693653..695455 (+) 1803 WP_012961672.1 oligoendopeptidase F Regulator
  GALLO_RS03660 (GALLO_0670) - 695529..696047 (+) 519 WP_012961673.1 GNAT family N-acetyltransferase -
  GALLO_RS03665 (GALLO_0671) - 696069..696680 (+) 612 WP_012961674.1 HAD-IA family hydrolase -
  GALLO_RS03670 (GALLO_0672) - 696734..697435 (+) 702 WP_009853780.1 O-methyltransferase -
  GALLO_RS03675 (GALLO_0673) - 697504..698613 (+) 1110 WP_012961675.1 peptidyl-prolyl cis-trans isomerase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68884.91 Da        Isoelectric Point: 4.5967

>NTDB_id=36190 GALLO_RS03655 WP_012961672.1 693653..695455(+) (pepF) [Streptococcus gallolyticus UCN34]
MSDNRSHIDEKYQWDLSTVFATDDAWEAELASLDSDLENAKAYKGHLTALSNDLLAITESYLALSRRLEKLYVYASMKND
QDTTVAKYQEYQAKATAIYAKFSEIFAFYEPELMQLSKEAFEDFVAETPALSAYAHFFEQLFKRQPHVLSQAEEELLAGA
QEIFGAAGETFGLLDNADIIFPIVLDDEGKEIQLTHGNFISLLESKNRDVRKEAYQALYATYEQFQHTYAKTLQTNVKVH
NYEARVHHFKSAREAALSANFIPESVYDTLIETVNANLPLLHRYVELRKKILKLDDLKMYDIHTPLSEMDMSFTYEEALA
KAEDVLAVFGKEYSERVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLFTLVHETGHSLHSTFTREN
QPYVYGDYSIFLAEIASTTNENILTETLLKEVDDDKARFAILNHYLDGFKSTIFRQAQFAEFEDIIHKADQAGEVLTSDY
LNQLYADLNEKYYGLSKADNPEIQYEWARIPHFYYNYYVYQYATGFAAASYLADKVVHGTQADIDRYLDYLKAGNSDYPL
NVIKKAGVDMTTSAYLDAAFRIFEERLDELEALIEKGAHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=36190 GALLO_RS03655 WP_012961672.1 693653..695455(+) (pepF) [Streptococcus gallolyticus UCN34]
ATGTCAGATAATCGTAGTCATATTGATGAAAAATACCAATGGGATTTAAGCACAGTTTTTGCCACAGATGATGCTTGGGA
AGCGGAGCTGGCTAGTCTTGATAGTGATTTAGAAAATGCTAAAGCTTACAAAGGGCATTTGACAGCGTTAAGTAATGATT
TGCTTGCTATTACGGAAAGTTACCTTGCCTTGTCGCGTCGTTTGGAGAAACTTTATGTTTATGCTTCAATGAAAAACGAC
CAAGATACAACAGTAGCCAAATATCAAGAATACCAAGCTAAAGCAACAGCAATCTATGCCAAGTTTAGTGAAATTTTTGC
TTTTTACGAACCTGAATTAATGCAATTGTCTAAAGAAGCTTTTGAGGATTTCGTGGCAGAAACACCAGCTTTATCTGCTT
ATGCACATTTCTTTGAGCAACTTTTCAAACGTCAACCGCATGTTTTGTCACAGGCTGAGGAAGAATTGTTAGCAGGTGCG
CAAGAAATTTTTGGAGCTGCAGGAGAAACATTTGGGCTTTTGGATAATGCTGACATCATTTTTCCAATCGTTCTAGATGA
TGAGGGCAAAGAAATTCAGCTAACGCATGGTAATTTCATTAGCTTGTTAGAATCAAAAAATCGTGATGTCCGCAAAGAAG
CTTACCAAGCTTTGTATGCAACTTATGAACAATTCCAACACACTTATGCGAAAACCTTGCAAACCAATGTCAAAGTGCAT
AACTATGAAGCGCGTGTTCATCATTTTAAATCAGCGCGTGAGGCAGCGCTTTCGGCTAATTTTATTCCAGAATCTGTTTA
TGATACCTTGATTGAAACGGTCAATGCTAACCTGCCTTTGCTTCATCGCTACGTGGAACTTCGCAAGAAAATCCTTAAAC
TGGATGATTTGAAAATGTACGATATTCATACGCCACTTTCTGAAATGGATATGAGTTTTACCTATGAAGAAGCTTTGGCA
AAAGCAGAAGATGTCTTGGCTGTTTTTGGCAAAGAATATTCTGAGCGTGTTCATCGTGCTTTTACAGAACGCTGGATTGA
CGTCCATGTCAATAAAGGCAAACGCTCTGGTGCCTACTCTGGTGGTTCGTATGATACCAATGCTTTCATGCTGTTAAATT
GGCAAGATACCTTGGATAATTTGTTTACCTTAGTTCACGAAACGGGGCACAGCCTGCATTCGACATTTACACGTGAAAAT
CAACCCTATGTTTATGGAGATTATAGTATTTTTTTGGCAGAAATTGCTTCAACAACTAATGAAAATATTTTGACAGAAAC
ACTTTTGAAAGAAGTTGATGATGACAAAGCACGCTTTGCAATTTTGAATCATTATCTTGATGGCTTCAAGAGCACCATTT
TCCGTCAAGCACAATTTGCAGAATTTGAAGATATCATTCATAAGGCAGACCAAGCTGGAGAAGTGTTGACGAGTGATTAC
CTCAACCAACTTTATGCCGACTTAAACGAGAAATATTATGGACTCAGCAAAGCAGACAACCCAGAAATCCAATACGAATG
GGCACGCATTCCGCATTTCTACTACAATTACTATGTTTACCAATACGCCACAGGATTTGCGGCAGCTAGTTATTTAGCTG
ATAAGGTTGTTCACGGTACACAAGCTGATATTGACCGCTACCTTGATTATCTGAAAGCAGGTAATTCTGATTATCCGCTT
AATGTGATTAAAAAAGCTGGTGTGGATATGACAACAAGTGCTTATCTAGACGCTGCTTTCCGAATTTTCGAGGAACGCTT
GGATGAGTTGGAAGCTTTAATTGAAAAAGGAGCACATCTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

70.333

100

0.703

Multiple sequence alignment