Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   FAZ95_RS08995 Genome accession   NZ_CP040077
Coordinates   1991071..1992447 (+) Length   458 a.a.
NCBI ID   WP_137332130.1    Uniprot ID   A0A4V1EH76
Organism   Trinickia violacea strain DHOD12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986071..1997447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ95_RS08975 (FAZ95_08975) - 1986516..1987517 (+) 1002 WP_137332126.1 DUF1853 family protein -
  FAZ95_RS08980 (FAZ95_08980) thiD 1987614..1988420 (-) 807 WP_137332127.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  FAZ95_RS08985 (FAZ95_08985) lplT 1988423..1989730 (-) 1308 WP_137332128.1 lysophospholipid transporter LplT -
  FAZ95_RS08990 (FAZ95_08990) alr 1989947..1991017 (+) 1071 WP_137332129.1 alanine racemase -
  FAZ95_RS08995 (FAZ95_08995) radA 1991071..1992447 (+) 1377 WP_137332130.1 DNA repair protein RadA Machinery gene
  FAZ95_RS09000 (FAZ95_09000) - 1992604..1992870 (+) 267 WP_254699858.1 DUF2866 domain-containing protein -
  FAZ95_RS09005 (FAZ95_09005) - 1992931..1993980 (-) 1050 WP_137332131.1 CaiB/BaiF CoA-transferase family protein -
  FAZ95_RS09010 (FAZ95_09010) - 1994053..1996002 (-) 1950 WP_137332132.1 ATP-binding cassette domain-containing protein -
  FAZ95_RS09015 (FAZ95_09015) - 1996128..1996607 (+) 480 WP_137332133.1 glutathione peroxidase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48797.25 Da        Isoelectric Point: 6.9501

>NTDB_id=361891 FAZ95_RS08995 WP_137332130.1 1991071..1992447(+) (radA) [Trinickia violacea strain DHOD12]
MAKQKTLYTCTECGGQAPKWQGQCPACNAWNTLVETVAESPNAHRFQSLAKSAPVQRLAEIEAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAGMANERRALYVSGEESAAQIGLRAQRLALLEPGSKAADLQLLAEIQLEKIQ
AAIETERPDVAVIDSIQTIYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGNLAGPRVLEHIVDTVLYF
EGDTHSSFRLVRAFKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQIVPGSCVLVTQEGSRPLLVEIQALVDTAHV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKIAEPAADLAVLLAIHSSMRNKPLPKGLFVFGEVGLA
GEIRPSPRGQERLKEAAKLGFTAALIPKANAPKQPIDGLQVLAVERIEQAIDRVKELE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=361891 FAZ95_RS08995 WP_137332130.1 1991071..1992447(+) (radA) [Trinickia violacea strain DHOD12]
GTGGCGAAGCAAAAGACGTTGTACACCTGCACGGAATGCGGCGGGCAGGCTCCGAAGTGGCAAGGACAGTGCCCCGCGTG
CAACGCGTGGAACACGCTCGTCGAGACCGTCGCCGAATCCCCGAATGCACACCGCTTCCAGTCGCTCGCGAAGAGCGCGC
CGGTTCAGCGGCTTGCCGAGATCGAAGCGGCCGACGTGCCGCGCTTCTCGACCGGCATCGGCGAATTCGACCGCGTGCTG
GGCGGCGGACTCGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCGGGGATCGGCAAATCGACGTTGCTGCTGCAGTC
GCTCGCGGGCATGGCGAATGAGCGGCGCGCGCTTTACGTGAGCGGTGAAGAATCGGCCGCGCAGATCGGCTTGCGCGCGC
AGCGTCTCGCATTGCTCGAACCCGGCTCGAAAGCGGCCGATTTGCAATTGCTCGCGGAAATCCAGCTCGAAAAAATCCAG
GCGGCGATCGAAACCGAACGCCCGGACGTCGCCGTGATCGACTCGATTCAGACGATCTACTCCGAAGCGCTCACGTCTGC
ACCGGGCTCCGTCGCACAGGTTCGCGAGTGCGCGGCGCAGCTCACGCGCATCGCCAAGCAGTCGGGCACCGCGATCATCA
TGGTCGGTCACGTCACGAAAGAGGGGAATCTCGCCGGCCCGCGCGTGCTTGAACACATCGTCGACACCGTCTTGTACTTC
GAAGGCGACACGCACTCGTCGTTCAGGCTCGTGCGAGCTTTCAAGAACCGCTTCGGCGCCGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGCTTGCGCGGCGTCGCGAATCCGTCCGCGCTGTTTCTTTCGCAGCACGAGCAGATCGTGCCCG
GCTCATGCGTGCTCGTTACACAGGAAGGCTCGCGGCCGCTGCTCGTCGAAATCCAAGCGCTCGTCGATACGGCGCACGTG
CCGAATCCGCGCCGGCTGGCAGTCGGGCTCGAGCAGAACCGCCTCGCGATGCTGCTCGCCGTGCTGCATCGCCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTTCTGAATGCCGTGGGCGGCGTGAAAATCGCCGAGCCGGCTGCCGATCTTGCGG
TGCTGCTCGCGATCCATTCGTCGATGCGCAACAAGCCGCTGCCCAAGGGGCTGTTCGTGTTCGGCGAAGTCGGCCTGGCC
GGCGAGATCCGGCCGTCGCCGCGCGGACAGGAACGGCTCAAGGAGGCGGCGAAGCTCGGGTTCACGGCGGCGCTGATTCC
GAAGGCGAACGCGCCGAAGCAGCCGATCGACGGCTTGCAAGTGCTCGCCGTGGAGCGCATCGAGCAGGCGATCGACCGCG
TCAAGGAACTCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(69-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1EH76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.142

100

0.5
  radA Streptococcus pneumoniae Rx1

48.052

100

0.485
  radA Streptococcus pneumoniae D39

48.052

100

0.485
  radA Streptococcus pneumoniae R6

48.052

100

0.485
  radA Streptococcus pneumoniae TIGR4

48.052

100

0.485
  radA Streptococcus mitis SK321

48.253

100

0.483
  radA Streptococcus mitis NCTC 12261

48.035

100

0.48

Multiple sequence alignment