Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   E3S98_RS12885 Genome accession   NZ_CP047786
Coordinates   2633508..2633978 (-) Length   156 a.a.
NCBI ID   WP_134413401.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_1150     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2628508..2638978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S98_RS12855 (E3S98_12855) - 2628548..2628961 (+) 414 WP_001123303.1 thiol-disulfide oxidoreductase DCC family protein -
  E3S98_RS12860 (E3S98_12860) - 2629161..2629604 (+) 444 WP_000070866.1 Dps family protein -
  E3S98_RS12865 (E3S98_12865) deoD 2629725..2630435 (-) 711 WP_160191692.1 purine-nucleoside phosphorylase -
  E3S98_RS12870 (E3S98_12870) deoC 2630750..2631412 (+) 663 WP_103086520.1 deoxyribose-phosphate aldolase -
  E3S98_RS12875 (E3S98_12875) - 2631691..2632992 (+) 1302 WP_001242318.1 pyrimidine-nucleoside phosphorylase -
  E3S98_RS12880 (E3S98_12880) - 2633006..2633356 (+) 351 WP_001024035.1 membrane protein -
  E3S98_RS12885 (E3S98_12885) luxS 2633508..2633978 (-) 471 WP_134413401.1 S-ribosylhomocysteine lyase Regulator
  E3S98_RS12890 (E3S98_12890) - 2634289..2635473 (+) 1185 WP_001291500.1 M20 family metallopeptidase -
  E3S98_RS12895 (E3S98_12895) ldmS 2635473..2636666 (+) 1194 WP_000183726.1 L-aspartate--L-methionine ligase LdmS -
  E3S98_RS12900 (E3S98_12900) - 2637065..2637736 (+) 672 WP_000120549.1 DUF2750 domain-containing protein -
  E3S98_RS12905 (E3S98_12905) coaW 2637866..2638669 (-) 804 WP_000862727.1 type II pantothenate kinase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17512.77 Da        Isoelectric Point: 5.7492

>NTDB_id=361890 E3S98_RS12885 WP_134413401.1 2633508..2633978(-) (luxS) [Staphylococcus aureus strain UP_1150]
MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEHLMAENIRNHSDKVVDLSPMG
CQTGFYVSFINHDNYDDVLNIVEATLNNVLNATEVPACNEVQCGWAASHSLEGAKTIAQAFLDKRNEWHDVFGTGK

Nucleotide


Download         Length: 471 bp        

>NTDB_id=361890 E3S98_RS12885 WP_134413401.1 2633508..2633978(-) (luxS) [Staphylococcus aureus strain UP_1150]
ATGACAAAAATGAATGTTGAAAGTTTCAATTTAGATCATACTAAGGTGGTTGCCCCATTTATTAGATTAGCGGGAACGAT
GGAAGGATTAAACGGAGATGTCATTCACAAATACGACATTCGTTTCAAACAACCAAACAAAGAACATATGGATATGCCCG
GACTACATTCATTAGAACATTTAATGGCTGAAAATATTAGAAATCATAGTGACAAAGTTGTTGATTTAAGTCCTATGGGT
TGCCAAACTGGTTTCTATGTATCATTTATTAATCATGATAATTATGATGATGTATTAAATATTGTTGAAGCAACTTTAAA
TAATGTGCTAAATGCTACTGAAGTGCCTGCTTGTAATGAAGTACAATGTGGCTGGGCAGCAAGTCATTCATTAGAAGGTG
CTAAAACTATCGCTCAAGCATTTCTAGACAAACGAAACGAATGGCATGATGTTTTCGGTACAGGAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(5-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

43.972

90.385

0.397