Detailed information NTG0361885

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: FAZ95_RS02355
• Genome accession: NZ_CP040077
• Coordinates: 543676..544815 (-)
• Length: 379 a.a.
• NCBI ID: WP_137330974.1
• Uniprot ID: A0A4P8IHG2
• Organism: Trinickia violacea strain DHOD12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 538676..549815

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FAZ95_RS02330 (FAZ95_02330)	leuA	538984..540654 (-)	1671	WP_137330969.1	2-isopropylmalate synthase	-
FAZ95_RS02340 (FAZ95_02340)	ybiB	541049..542026 (-)	978	WP_137330971.1	DNA-binding protein YbiB	-
FAZ95_RS02345 (FAZ95_02345)	-	542205..542903 (+)	699	WP_137330972.1	fumarylacetoacetate hydrolase family protein	-
FAZ95_RS02350 (FAZ95_02350)	maiA	542936..543580 (+)	645	WP_137330973.1	maleylacetoacetate isomerase	-
FAZ95_RS02355 (FAZ95_02355)	pilA	543676..544815 (-)	1140	WP_137330974.1	signal recognition particle-docking protein FtsY	Machinery gene
FAZ95_RS02360 (FAZ95_02360)	rsmD	545085..545699 (+)	615	WP_137330975.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
FAZ95_RS02365 (FAZ95_02365)	coaD	545811..546317 (+)	507	WP_137330976.1	pantetheine-phosphate adenylyltransferase	-
FAZ95_RS02370 (FAZ95_02370)	-	546439..546696 (+)	258	WP_137330977.1	YfhL family 4Fe-4S dicluster ferredoxin	-
FAZ95_RS02375 (FAZ95_02375)	hisC	546788..547855 (-)	1068	WP_137330978.1	histidinol-phosphate transaminase	-
FAZ95_RS02380 (FAZ95_02380)	pth	547916..548518 (-)	603	WP_137330979.1	aminoacyl-tRNA hydrolase	-
FAZ95_RS02390 (FAZ95_02390)	-	548648..549268 (-)	621	WP_137330980.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 40539.38 Da
• Isoelectric Point: 4.7259

>NTDB_id=361885 FAZ95_RS02355 WP_137330974.1 543676..544815(-) (pilA) [Trinickia violacea strain DHOD12]
MFSFFKRFKGSKAPETAQDESLATQEADAEQAEAPASPSSRSEFEPPGEPSDELYAEPETQAEAAVESVEIVPPPAPEPA
AKKSWLDRLKSGLSKTSAGLTGIFVGAKIDDDLYEELETALLMSDAGVEATTYLLETLREKVRAERLTDPMQVKAALRSL
LVSLLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAAREQLAIWGQRNNVTVVAQ
ESGDPAAVIFDAVSAARARKIDVLMADTAGRLPTQLHLMEELRKVKRVIGKALDGAPHEVLLVIDANTGQNALAQVKAFD
DALTLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFNAEEFADALLG

Nucleotide

• Length: 1140 bp

>NTDB_id=361885 FAZ95_RS02355 WP_137330974.1 543676..544815(-) (pilA) [Trinickia violacea strain DHOD12]
ATGTTCAGTTTTTTTAAACGATTCAAGGGCTCGAAAGCGCCCGAAACCGCGCAGGACGAGTCTCTAGCTACCCAGGAAGC
CGACGCCGAACAAGCGGAAGCGCCCGCGTCGCCATCGAGCCGCAGCGAATTCGAGCCGCCTGGCGAGCCCAGCGACGAAC
TGTACGCCGAGCCGGAAACGCAGGCCGAAGCCGCGGTCGAGAGCGTCGAAATCGTTCCGCCTCCGGCCCCCGAGCCTGCT
GCCAAGAAATCCTGGCTCGATCGGCTGAAGTCCGGCTTGTCGAAGACCAGCGCGGGACTGACCGGCATCTTCGTCGGCGC
GAAGATCGACGATGATCTCTATGAGGAGCTCGAAACTGCGCTCCTGATGTCGGACGCCGGCGTTGAAGCGACCACCTATC
TGCTCGAGACGCTGCGCGAAAAGGTTCGCGCCGAGCGTCTCACCGACCCGATGCAAGTGAAGGCCGCTTTGCGCTCGCTG
CTAGTCAGCCTCCTGAAGCCGCTCGAAAAATCGCTGATGCTCGGCCGCGCGCAGCCTCTCGTGATGATGATCGCGGGCGT
CAACGGCGCGGGCAAGACCACGAGCATCGGCAAGCTCGCGAAGCATCTTCAGCGCTTCGACCAATCGGTGCTGCTGGCCG
CGGGCGACACGTTCCGCGCCGCCGCGCGCGAACAGCTTGCGATCTGGGGACAGCGCAACAACGTCACGGTCGTCGCGCAG
GAAAGCGGCGATCCGGCCGCGGTGATTTTCGATGCGGTGAGCGCGGCGCGCGCCCGCAAGATCGACGTGCTGATGGCCGA
TACGGCCGGCCGCTTGCCGACTCAGCTGCATCTGATGGAAGAGCTGCGCAAGGTGAAGCGCGTGATCGGCAAGGCGCTCG
ACGGCGCGCCGCACGAGGTGCTGCTCGTCATCGACGCGAACACCGGCCAGAATGCGCTCGCGCAAGTGAAGGCGTTCGAC
GACGCGCTCACCCTGACCGGCCTCATCGTGACGAAGCTCGACGGCACCGCGAAGGGCGGCATTCTCGCGGCGATCGCGCG
TCAGCGGCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAAAAGGTCGAGGATCTGCAGCCGTTCAACGCCGAAGAGTTCG
CCGACGCGCTGCTTGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (99-159)

• SRP54-type protein, GTPase domain (SRP54) (180-379)

3D structure

• AlphaFold DB: A0A4P8IHG2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.365	100	0.586