Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AR1Y2_RS12845 Genome accession   NZ_CP040058
Coordinates   2588758..2590113 (-) Length   451 a.a.
NCBI ID   WP_137329315.1    Uniprot ID   -
Organism   Anaerostipes rhamnosivorans strain 1y2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2583758..2595113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR1Y2_RS12825 (AR1Y2_2570) groL 2584345..2585973 (-) 1629 WP_137329311.1 chaperonin GroEL -
  AR1Y2_RS12830 (AR1Y2_2571) groES 2585995..2586267 (-) 273 WP_137329312.1 co-chaperone GroES -
  AR1Y2_RS12835 (AR1Y2_2572) - 2586411..2587001 (-) 591 WP_137329313.1 GrpB family protein -
  AR1Y2_RS12840 (AR1Y2_2573) - 2587045..2588703 (-) 1659 WP_137329314.1 glutamine--tRNA ligase/YqeY domain fusion protein -
  AR1Y2_RS12845 (AR1Y2_2574) radA 2588758..2590113 (-) 1356 WP_137329315.1 DNA repair protein RadA Machinery gene
  AR1Y2_RS12850 (AR1Y2_2575) - 2590129..2590542 (-) 414 WP_137329316.1 endosialidase -
  AR1Y2_RS12855 (AR1Y2_2576) - 2590599..2593061 (-) 2463 WP_137329317.1 ATP-dependent Clp protease ATP-binding subunit -
  AR1Y2_RS12860 (AR1Y2_2577) - 2593071..2593448 (-) 378 WP_137329318.1 GntR family transcriptional regulator -
  AR1Y2_RS12865 (AR1Y2_2578) purD 2593581..2594852 (-) 1272 WP_137329319.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 49102.06 Da        Isoelectric Point: 7.4576

>NTDB_id=361846 AR1Y2_RS12845 WP_137329315.1 2588758..2590113(-) (radA) [Anaerostipes rhamnosivorans strain 1y2]
MAKAKTVFFCSECGHESSKWMGQCPACKSWNTFVEEKQSVTKKGGAKPKRASASPMSMSEVSIKSEERIPTGIGELDRVL
GGGIVTGSLSLVGGDPGIGKSTLLLQVCRNLVNAKRKVLYVSGEESAHQIKMRAERIGTFEDELLLFCETNLEEILESVR
KVRPEFVVIDSIQTMYSEELTAAAGSVSQVREVTAQMMRIAKEENIAVFIVGHVTKEGVVAGPRTLEHMVDTVLYFEGER
EAAYRILRGVKNRFGSTNEIGVFEMCGNGLVEVENPSKMMLNGRPVDASGSVVVCSLEGTRPILIEIQALISPTSFQMPR
RTAVGIDYNRVNLLMAVLEKRVGLQLGGCDAYVNLAGGMRLGEPAIDLGIILAIASSYKNLPLPEDTIIFGEVGLVGEIR
RVSQGDQRIKEAEKLGFKTCILPKANVDSLKIKTKMRLLGVANVREALDCI

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=361846 AR1Y2_RS12845 WP_137329315.1 2588758..2590113(-) (radA) [Anaerostipes rhamnosivorans strain 1y2]
ATGGCAAAGGCAAAAACCGTATTTTTCTGCAGCGAGTGCGGACATGAATCGTCCAAGTGGATGGGACAGTGTCCGGCCTG
CAAATCATGGAACACCTTTGTAGAAGAAAAGCAGTCAGTGACAAAAAAGGGAGGGGCAAAGCCCAAGCGGGCTTCTGCCT
CTCCTATGAGTATGTCCGAGGTTTCTATAAAGAGCGAGGAGCGGATTCCCACAGGCATCGGTGAGCTGGACAGAGTCCTT
GGAGGAGGCATTGTGACCGGTTCCCTTTCGCTGGTGGGAGGAGATCCGGGAATTGGTAAATCCACTCTGCTTCTCCAGGT
CTGCAGGAATTTAGTCAATGCAAAACGAAAGGTTCTGTATGTTTCCGGGGAAGAGTCGGCTCACCAGATCAAGATGCGCG
CTGAGAGGATTGGAACATTTGAAGATGAGCTTCTCCTGTTTTGTGAGACAAATTTAGAAGAGATCCTGGAGTCGGTTCGG
AAGGTCCGGCCAGAATTTGTGGTAATCGACTCTATCCAGACCATGTACAGTGAAGAACTCACCGCTGCGGCGGGTAGTGT
TTCTCAGGTTAGGGAAGTGACCGCGCAGATGATGCGCATCGCCAAGGAAGAAAATATCGCTGTCTTTATTGTGGGACATG
TGACAAAGGAAGGCGTTGTGGCAGGGCCGAGGACACTGGAGCATATGGTGGATACGGTCCTTTATTTTGAAGGAGAGAGA
GAAGCGGCATACCGGATCCTGAGGGGCGTAAAAAACCGCTTTGGCTCCACAAATGAGATCGGAGTGTTTGAGATGTGCGG
AAACGGTCTTGTGGAGGTGGAAAATCCATCCAAGATGATGTTAAATGGCCGTCCTGTGGATGCCTCAGGTTCTGTGGTGG
TATGTTCACTGGAGGGAACCAGGCCGATTCTCATTGAGATCCAGGCACTGATCTCCCCAACCAGCTTCCAGATGCCCAGG
AGGACTGCCGTGGGGATCGACTACAACAGGGTCAATCTTCTCATGGCAGTCTTGGAAAAGAGGGTCGGCCTGCAGCTGGG
CGGCTGTGACGCCTATGTAAACCTGGCCGGGGGTATGAGGCTCGGGGAGCCAGCCATCGACCTAGGGATCATTTTAGCCA
TTGCATCCAGCTATAAAAATCTGCCTTTGCCTGAGGACACGATCATTTTCGGCGAGGTGGGTCTTGTGGGAGAGATCAGG
AGAGTATCCCAGGGTGACCAGAGGATCAAGGAGGCAGAGAAGCTTGGATTTAAAACCTGTATTCTGCCCAAGGCAAATGT
GGACAGCTTAAAGATCAAGACAAAGATGCGGCTTCTGGGTGTGGCAAATGTAAGGGAAGCCCTTGATTGTATTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-218)

Subunit ChlI of Mg-chelatase (ChlI)

(348-426)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

57.768

100

0.585
  radA Streptococcus pneumoniae Rx1

54.626

100

0.55
  radA Streptococcus pneumoniae D39

54.626

100

0.55
  radA Streptococcus pneumoniae R6

54.626

100

0.55
  radA Streptococcus pneumoniae TIGR4

54.626

100

0.55
  radA Streptococcus mitis SK321

54.626

100

0.55
  radA Streptococcus mitis NCTC 12261

54.626

100

0.55

Multiple sequence alignment