Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   FDF20_RS16130 Genome accession   NZ_CP040050
Coordinates   3333420..3334304 (-) Length   294 a.a.
NCBI ID   WP_000914772.1    Uniprot ID   A0A245ZX16
Organism   Acinetobacter baumannii strain VB16141     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3328420..3339304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDF20_RS16115 (FDF20_16115) miaB 3330267..3331718 (+) 1452 WP_000218141.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  FDF20_RS16120 (FDF20_16120) - 3331756..3332844 (+) 1089 WP_000122983.1 PhoH family protein -
  FDF20_RS16125 (FDF20_16125) ybeY 3332854..3333330 (+) 477 WP_000703567.1 rRNA maturation RNase YbeY -
  FDF20_RS16130 (FDF20_16130) tonB2 3333420..3334304 (-) 885 WP_000914772.1 energy transducer TonB Machinery gene
  FDF20_RS16135 (FDF20_16135) - 3334535..3335206 (+) 672 WP_001193955.1 hypothetical protein -
  FDF20_RS16140 (FDF20_16140) - 3335364..3336077 (+) 714 WP_000201542.1 DUF3108 domain-containing protein -
  FDF20_RS16145 (FDF20_16145) - 3336150..3336725 (+) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  FDF20_RS16150 (FDF20_16150) wrbA 3336778..3337371 (-) 594 WP_001183344.1 NAD(P)H:quinone oxidoreductase -
  FDF20_RS16155 (FDF20_16155) - 3337659..3338906 (+) 1248 WP_000893466.1 YihY family inner membrane protein -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33596.51 Da        Isoelectric Point: 9.4087

>NTDB_id=361812 FDF20_RS16130 WP_000914772.1 3333420..3334304(-) (tonB2) [Acinetobacter baumannii strain VB16141]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FRAAHRMSSNSPAPMPSDASTGEAQLETLEKMQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDANMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=361812 FDF20_RS16130 WP_000914772.1 3333420..3334304(-) (tonB2) [Acinetobacter baumannii strain VB16141]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCGCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTAATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGCAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAATGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAAATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCGGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGCAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A245ZX16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.32

100

0.993

Multiple sequence alignment