Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   GALLO_RS01435 Genome accession   NC_013798
Coordinates   261008..261493 (+) Length   161 a.a.
NCBI ID   WP_080895270.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 256008..266493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS01435 (GALLO_0235) comX/sigX 261008..261493 (+) 486 WP_080895270.1 sigma-70 family RNA polymerase sigma factor Regulator
  GALLO_RS01440 (GALLO_0236) - 261633..261899 (+) 267 WP_009853366.1 ACT domain-containing protein -
  GALLO_RS01445 (GALLO_0237) - 261911..263248 (+) 1338 WP_009853367.1 PFL family protein -
  GALLO_RS01450 (GALLO_0238) - 263472..264176 (+) 705 WP_009853368.1 histidine phosphatase family protein -
  GALLO_RS01455 (GALLO_0239) - 264160..264933 (+) 774 WP_009853369.1 M15 family metallopeptidase -
  GALLO_RS01460 (GALLO_0240) - 264930..265511 (+) 582 WP_012961370.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19433.43 Da        Isoelectric Point: 8.6960

>NTDB_id=36175 GALLO_RS01435 WP_080895270.1 261008..261493(+) (comX/sigX) [Streptococcus gallolyticus UCN34]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLRAVEQRLGVGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=36175 GALLO_RS01435 WP_080895270.1 261008..261493(+) (comX/sigX) [Streptococcus gallolyticus UCN34]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCGGGCGGTTGAGCAGCGATTGGGAGTAGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.