Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   E8M85_RS07760 Genome accession   NZ_CP040016
Coordinates   1477749..1478060 (-) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni subsp. jejuni strain 9090     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472749..1483060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8M85_RS07740 (E8M85_07820) ctsE 1473618..1475177 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  E8M85_RS07745 (E8M85_07825) ctsX 1475167..1475754 (-) 588 WP_002851370.1 membrane protein Machinery gene
  E8M85_RS07750 (E8M85_07830) ctsP 1475758..1476366 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  E8M85_RS07755 (E8M85_07835) ctsD 1476359..1477771 (-) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  E8M85_RS07760 (E8M85_07840) ctsR 1477749..1478060 (-) 312 WP_015016496.1 hypothetical protein Machinery gene
  E8M85_RS07765 (E8M85_07845) nifJ 1478084..1481644 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  E8M85_RS07770 (E8M85_07850) - 1481737..1482378 (-) 642 WP_002851542.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=361625 E8M85_RS07760 WP_015016496.1 1477749..1478060(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 9090]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=361625 E8M85_RS07760 WP_015016496.1 1477749..1478060(-) (ctsR) [Campylobacter jejuni subsp. jejuni strain 9090]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99

Multiple sequence alignment